Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03000

Experiment: PYE with Nickel (II) chloride 0.3 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Nickel (II) chloride 0.3 mM
3,153,289	-		CCNA_03904	0.73	+0.8
3,153,308	+		CCNA_03904	0.84	-0.3
3,153,329	+				-0.5
3,153,347	-				+2.2
3,153,377	+				-0.2
3,153,474	+				-1.2
3,153,474	+				-1.1
3,153,482	-				+0.8
3,153,482	-				-0.6
3,153,482	-				-0.2
3,153,487	+				-0.2
3,153,487	+				+0.3
3,153,487	+				-0.5
3,153,489	+				-0.7
3,153,495	-				+1.2
3,153,495	-				-0.7
3,153,495	-				+0.2
3,153,497	-				+1.9
3,153,512	+				+0.6
3,153,517	+				+1.4
3,153,546	+				-1.0
3,153,546	+				-0.1
3,153,554	-				-1.0
3,153,554	-				-0.7
3,153,554	-				-0.7
3,153,554	-				-0.7
3,153,554	-				+0.1
3,153,554	-				-0.5
3,153,583	-		CCNA_02999	0.11	+0.1
3,153,646	+		CCNA_02999	0.19	+0.8
3,153,666	+		CCNA_02999	0.22	-1.1
3,153,727	+		CCNA_02999	0.29	+0.8
3,153,786	+		CCNA_02999	0.37	+0.8
3,153,792	+		CCNA_02999	0.38	-0.7
3,153,794	-		CCNA_02999	0.38	+0.6
3,153,794	-		CCNA_02999	0.38	+0.2
3,153,807	+		CCNA_02999	0.39	-1.6
3,153,807	+		CCNA_02999	0.39	-0.0
3,153,836	-		CCNA_02999	0.43	-1.7
3,153,858	-		CCNA_02999	0.46	+0.3
3,153,859	-		CCNA_02999	0.46	-1.4
3,153,869	-		CCNA_02999	0.47	-0.5
3,153,886	-		CCNA_02999	0.49	-1.2
3,153,901	-		CCNA_02999	0.51	+0.8
3,153,901	-		CCNA_02999	0.51	-0.2
3,153,901	-		CCNA_02999	0.51	-2.0
3,153,944	+		CCNA_02999	0.57	+0.1
3,153,950	+		CCNA_02999	0.58	-2.4
3,153,950	+		CCNA_02999	0.58	-1.1
3,153,959	-		CCNA_02999	0.59	+0.8
3,153,960	+		CCNA_02999	0.59	-0.3
3,153,973	-		CCNA_02999	0.61	-0.1
3,153,979	+		CCNA_02999	0.61	+1.3
3,153,987	-		CCNA_02999	0.62	+1.6
3,154,022	+		CCNA_02999	0.67	-0.1
3,154,022	+		CCNA_02999	0.67	+0.1
3,154,030	-		CCNA_02999	0.68	-1.1
3,154,043	+		CCNA_02999	0.69	-1.6
3,154,044	+		CCNA_02999	0.70	+1.1
3,154,044	+		CCNA_02999	0.70	+0.2
3,154,044	+		CCNA_02999	0.70	+2.2
3,154,052	-		CCNA_02999	0.71	+0.5
3,154,052	-		CCNA_02999	0.71	+1.6
3,154,091	+		CCNA_02999	0.76	+0.9
3,154,115	+		CCNA_02999	0.79	+0.9
3,154,124	-		CCNA_02999	0.80	-0.6
3,154,134	-		CCNA_02999	0.81	-0.5
3,154,146	+		CCNA_02999	0.83	+1.1
3,154,244	-				+0.7
3,154,300	-				+0.2
3,154,337	-				-0.4
3,154,338	-				-0.6
3,154,384	-		CCNA_03000	0.12	+0.1
3,154,397	+		CCNA_03000	0.14	-0.1
3,154,405	-		CCNA_03000	0.15	+1.1
3,154,430	+		CCNA_03000	0.18	+1.2
3,154,430	+		CCNA_03000	0.18	+1.6
3,154,430	+		CCNA_03000	0.18	-0.3
3,154,438	-		CCNA_03000	0.19	-0.4
3,154,438	-		CCNA_03000	0.19	-1.0
3,154,438	-		CCNA_03000	0.19	+0.0
3,154,449	-		CCNA_03000	0.20	-0.8
3,154,471	-		CCNA_03000	0.23	-1.1
3,154,491	-		CCNA_03000	0.25	+0.9
3,154,491	-		CCNA_03000	0.25	-1.2
3,154,496	-		CCNA_03000	0.26	+0.1
3,154,496	-		CCNA_03000	0.26	-1.6
3,154,496	-		CCNA_03000	0.26	-0.6
3,154,522	+		CCNA_03000	0.29	+1.4
3,154,553	+		CCNA_03000	0.33	+0.1
3,154,630	+		CCNA_03000	0.42	-0.9
3,154,638	-		CCNA_03000	0.43	-1.6
3,154,645	+		CCNA_03000	0.43	-0.7
3,154,713	+		CCNA_03000	0.51	-0.0
3,154,722	-		CCNA_03000	0.53	+1.1
3,154,722	-		CCNA_03000	0.53	-0.4
3,154,728	+		CCNA_03000	0.53	-1.0
3,154,757	+		CCNA_03000	0.57	+0.2
3,154,757	+		CCNA_03000	0.57	+0.3
3,154,772	+		CCNA_03000	0.58	-0.2
3,154,780	-		CCNA_03000	0.59	-1.7
3,154,780	-		CCNA_03000	0.59	-0.8
3,154,780	-		CCNA_03000	0.59	+1.6
3,154,780	-		CCNA_03000	0.59	+0.3
3,154,780	-		CCNA_03000	0.59	-1.5
3,154,780	-		CCNA_03000	0.59	+0.2
3,154,828	-		CCNA_03000	0.65	-0.8
3,154,833	-		CCNA_03000	0.66	-0.2
3,154,890	+		CCNA_03000	0.72	-0.9
3,154,896	+		CCNA_03000	0.73	+1.8
3,154,896	+		CCNA_03000	0.73	-0.3
3,154,904	-		CCNA_03000	0.74	-1.2
3,154,904	-		CCNA_03000	0.74	+0.6
3,154,904	-		CCNA_03000	0.74	-0.7
3,154,908	+		CCNA_03000	0.75	+1.2
3,154,916	-		CCNA_03000	0.76	+1.6
3,154,924	+		CCNA_03000	0.77	-2.0
3,154,932	+		CCNA_03000	0.77	-1.2
3,154,949	+		CCNA_03000	0.79	-1.3
3,154,985	-		CCNA_03000	0.84	-1.0
3,155,000	+		CCNA_03000	0.86	+1.6
3,155,051	+				+1.1
3,155,059	-				-1.0
3,155,061	-				-0.8
3,155,061	-				-0.9
3,155,078	-				-1.6
3,155,085	+				-0.2
3,155,085	+				-0.8
3,155,085	+				+0.5
3,155,091	+				+3.2
3,155,093	-				+0.4
3,155,093	-				+0.9
3,155,093	-				-0.2
3,155,093	-				-1.7
3,155,099	-				+0.5
3,155,117	-				-1.9
3,155,125	-				+1.3
3,155,143	+				-1.2
3,155,151	-				-1.5
3,155,154	+				-1.2
3,155,193	-				-0.7
3,155,198	-				-0.2
3,155,198	-				+1.0
3,155,205	-				-0.9
3,155,205	-				+1.6
3,155,221	+				-0.1
3,155,222	-				-0.5
3,155,229	-				-0.1
3,155,230	+				+0.1
3,155,231	-				-0.3
3,155,233	-				-0.5
3,155,238	-				+1.0
3,155,286	+		CCNA_03001	0.22	-2.1
3,155,286	+		CCNA_03001	0.22	-1.1
3,155,286	+		CCNA_03001	0.22	-0.1
3,155,286	+		CCNA_03001	0.22	+1.2
3,155,286	+		CCNA_03001	0.22	-0.3
3,155,286	+		CCNA_03001	0.22	+0.7
3,155,286	+		CCNA_03001	0.22	+0.1
3,155,286	+		CCNA_03001	0.22	+0.6
3,155,293	+		CCNA_03001	0.25	-0.3
3,155,294	-		CCNA_03001	0.25	+0.4
3,155,294	-		CCNA_03001	0.25	-0.3
3,155,294	-		CCNA_03001	0.25	-1.6
3,155,301	-		CCNA_03001	0.27	+0.1
3,155,301	-		CCNA_03001	0.27	+0.1
3,155,301	-		CCNA_03001	0.27	-0.9
3,155,312	-		CCNA_03001	0.31	-1.0
3,155,319	-		CCNA_03001	0.34	-0.7
3,155,339	+		CCNA_03001	0.41	+0.1
3,155,351	+		CCNA_03001	0.45	+0.5
3,155,351	+		CCNA_03001	0.45	-1.2
3,155,359	-		CCNA_03001	0.48	+0.1
3,155,359	-		CCNA_03001	0.48	-0.2
3,155,368	+		CCNA_03001	0.51	+0.1
3,155,415	+		CCNA_03001	0.67	+1.2
3,155,415	+		CCNA_03001	0.67	+0.8
3,155,428	-		CCNA_03001	0.72	-0.4
3,155,431	+		CCNA_03001	0.73	+0.1
3,155,436	+		CCNA_03001	0.75	+1.2
3,155,441	+		CCNA_03001	0.76	-0.7
3,155,444	-		CCNA_03001	0.78	-1.8
3,155,444	-		CCNA_03001	0.78	-0.6
3,155,444	-		CCNA_03001	0.78	-0.1
3,155,466	-		CCNA_03001	0.85	+1.4
3,155,468	+		CCNA_03001	0.86	+1.6
3,155,470	-		CCNA_03001	0.87	-2.2
3,155,470	-		CCNA_03001	0.87	+0.4
3,155,471	-		CCNA_03001	0.87	-0.4
3,155,484	-				-0.8
3,155,495	-				-0.4
3,155,512	+				-0.7
3,155,520	-				-0.5
3,155,520	-				-0.3
3,155,520	-				+0.9
3,155,520	-				-0.4
3,155,530	-				-0.5
3,155,543	+				-0.2
3,155,570	-				+2.2
3,155,577	-				-1.4
3,155,577	-				+1.0
3,155,577	-				-0.2
3,155,637	+				-2.6
3,155,644	-				+1.4
3,155,645	+				-0.9
3,155,645	+				-0.6
3,155,651	-				-0.1
3,155,653	-				-0.9
3,155,653	-				-1.7
3,155,668	-				+0.1
3,155,668	-				-0.9
3,155,669	+				+0.8
3,155,677	-				+0.0
3,155,703	+				+0.1
3,155,703	+				+0.5
3,155,703	+				-0.1
3,155,703	+				-0.2
3,155,703	+				-0.2
3,155,703	+				-0.0
3,155,703	+				+0.1
3,155,703	+				+0.9
3,155,703	+				+1.6
3,155,703	+				+0.8
3,155,703	+				+0.4
3,155,703	+				-1.1
3,155,703	+				+1.1
3,155,703	+				-1.9
3,155,703	+				-0.7
3,155,711	-				-0.2
3,155,711	-				-0.6
3,155,711	-				-0.8
3,155,711	-				-0.1
3,155,711	-				+0.2
3,155,711	-				-2.2
3,155,711	-				+3.2
3,155,711	-				-0.2
3,155,711	-				-0.5
3,155,711	-				-0.9
3,155,711	-				-0.1
3,155,711	-				+0.8
3,155,711	-				+0.2
3,155,711	-				-0.3
3,155,730	+				+0.1
3,155,735	+				-0.0
3,155,736	-				-1.2
3,155,738	-				-0.0
3,155,738	-				+0.4
3,155,738	-				-0.7
3,155,738	-				-1.2
3,155,738	-				-0.0
3,155,738	-				+1.1
3,155,738	-				-0.9
3,155,738	-				+0.5
3,155,738	-				+0.7
3,155,738	-				+0.3
3,155,738	-				-0.5
3,155,738	-				-1.2
3,155,738	-				+0.1
3,155,738	-				+0.5
3,155,738	-				-0.4
3,155,738	-				-0.1
3,155,738	-				-0.4
3,155,738	-				-1.6
3,155,738	-				-0.1
3,155,738	-				+0.7
3,155,738	-				-2.3
3,155,738	-				-0.1