Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02158 and CCNA_02159 overlap by 4 nucleotides CCNA_02159 and CCNA_02160 are separated by 110 nucleotides CCNA_02160 and CCNA_02161 are separated by 131 nucleotides
CCNA_02158: CCNA_02158 - GT2 family glycosyltransferase, at 2,313,968 to 2,314,924
_02158
CCNA_02159: CCNA_02159 - hypothetical protein, at 2,314,921 to 2,315,475
_02159
CCNA_02160: CCNA_02160 - hypothetical protein, at 2,315,586 to 2,316,095
_02160
CCNA_02161: CCNA_02161 - TetR-family transcriptional regulator, at 2,316,227 to 2,316,895
_02161
Position (kb)
2314
2315
2316 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2313.965 kb on + strand at 2314.001 kb on - strand at 2314.021 kb on + strand at 2314.036 kb on + strand at 2314.036 kb on + strand at 2314.046 kb on + strand at 2314.067 kb on - strand, within CCNA_02158 at 2314.075 kb on - strand, within CCNA_02158 at 2314.077 kb on - strand, within CCNA_02158 at 2314.077 kb on - strand, within CCNA_02158 at 2314.160 kb on - strand, within CCNA_02158 at 2314.176 kb on + strand, within CCNA_02158 at 2314.205 kb on + strand, within CCNA_02158 at 2314.284 kb on + strand, within CCNA_02158 at 2314.286 kb on + strand, within CCNA_02158 at 2314.295 kb on + strand, within CCNA_02158 at 2314.314 kb on + strand, within CCNA_02158 at 2314.332 kb on - strand, within CCNA_02158 at 2314.339 kb on + strand, within CCNA_02158 at 2314.344 kb on + strand, within CCNA_02158 at 2314.353 kb on - strand, within CCNA_02158 at 2314.354 kb on - strand, within CCNA_02158 at 2314.375 kb on + strand, within CCNA_02158 at 2314.375 kb on + strand, within CCNA_02158 at 2314.397 kb on - strand, within CCNA_02158 at 2314.427 kb on + strand, within CCNA_02158 at 2314.444 kb on - strand, within CCNA_02158 at 2314.449 kb on - strand, within CCNA_02158 at 2314.457 kb on - strand, within CCNA_02158 at 2314.485 kb on + strand, within CCNA_02158 at 2314.513 kb on + strand, within CCNA_02158 at 2314.522 kb on - strand, within CCNA_02158 at 2314.557 kb on + strand, within CCNA_02158 at 2314.565 kb on - strand, within CCNA_02158 at 2314.565 kb on - strand, within CCNA_02158 at 2314.580 kb on - strand, within CCNA_02158 at 2314.607 kb on + strand, within CCNA_02158 at 2314.619 kb on - strand, within CCNA_02158 at 2314.639 kb on + strand, within CCNA_02158 at 2314.639 kb on + strand, within CCNA_02158 at 2314.639 kb on + strand, within CCNA_02158 at 2314.639 kb on + strand, within CCNA_02158 at 2314.639 kb on + strand at 2314.647 kb on - strand, within CCNA_02158 at 2314.650 kb on + strand, within CCNA_02158 at 2314.650 kb on + strand, within CCNA_02158 at 2314.658 kb on - strand, within CCNA_02158 at 2314.670 kb on + strand, within CCNA_02158 at 2314.670 kb on + strand, within CCNA_02158 at 2314.673 kb on - strand, within CCNA_02158 at 2314.673 kb on - strand, within CCNA_02158 at 2314.673 kb on - strand, within CCNA_02158 at 2314.673 kb on - strand, within CCNA_02158 at 2314.675 kb on + strand, within CCNA_02158 at 2314.678 kb on - strand, within CCNA_02158 at 2314.678 kb on - strand, within CCNA_02158 at 2314.683 kb on - strand, within CCNA_02158 at 2314.683 kb on - strand, within CCNA_02158 at 2314.689 kb on + strand, within CCNA_02158 at 2314.693 kb on + strand, within CCNA_02158 at 2314.695 kb on - strand, within CCNA_02158 at 2314.695 kb on - strand, within CCNA_02158 at 2314.741 kb on - strand, within CCNA_02158 at 2314.744 kb on + strand, within CCNA_02158 at 2314.747 kb on - strand, within CCNA_02158 at 2314.752 kb on - strand, within CCNA_02158 at 2314.765 kb on - strand, within CCNA_02158 at 2314.771 kb on - strand, within CCNA_02158 at 2314.805 kb on + strand, within CCNA_02158 at 2314.805 kb on + strand, within CCNA_02158 at 2314.805 kb on + strand, within CCNA_02158 at 2314.806 kb on - strand, within CCNA_02158 at 2314.813 kb on - strand, within CCNA_02158 at 2314.813 kb on - strand, within CCNA_02158 at 2314.813 kb on - strand, within CCNA_02158 at 2314.852 kb on - strand at 2314.902 kb on + strand at 2314.902 kb on + strand at 2314.991 kb on - strand, within CCNA_02159 at 2315.011 kb on - strand, within CCNA_02159 at 2315.011 kb on - strand, within CCNA_02159 at 2315.011 kb on - strand, within CCNA_02159 at 2315.011 kb on - strand, within CCNA_02159 at 2315.016 kb on - strand, within CCNA_02159 at 2315.034 kb on + strand, within CCNA_02159 at 2315.068 kb on - strand, within CCNA_02159 at 2315.070 kb on + strand, within CCNA_02159 at 2315.091 kb on + strand, within CCNA_02159 at 2315.099 kb on - strand, within CCNA_02159 at 2315.099 kb on - strand, within CCNA_02159 at 2315.174 kb on - strand, within CCNA_02159 at 2315.190 kb on + strand, within CCNA_02159 at 2315.198 kb on + strand, within CCNA_02159 at 2315.198 kb on + strand, within CCNA_02159 at 2315.198 kb on - strand, within CCNA_02159 at 2315.206 kb on - strand, within CCNA_02159 at 2315.206 kb on - strand, within CCNA_02159 at 2315.206 kb on - strand, within CCNA_02159 at 2315.219 kb on - strand, within CCNA_02159 at 2315.221 kb on - strand, within CCNA_02159 at 2315.245 kb on - strand, within CCNA_02159 at 2315.318 kb on - strand, within CCNA_02159 at 2315.354 kb on - strand, within CCNA_02159 at 2315.383 kb on + strand, within CCNA_02159 at 2315.388 kb on + strand, within CCNA_02159 at 2315.388 kb on + strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.396 kb on - strand, within CCNA_02159 at 2315.400 kb on + strand, within CCNA_02159 at 2315.425 kb on - strand at 2315.432 kb on + strand at 2315.588 kb on + strand at 2315.633 kb on + strand at 2315.641 kb on - strand, within CCNA_02160 at 2315.641 kb on - strand, within CCNA_02160 at 2315.667 kb on - strand, within CCNA_02160 at 2315.690 kb on + strand, within CCNA_02160 at 2315.744 kb on - strand, within CCNA_02160 at 2315.801 kb on - strand, within CCNA_02160 at 2315.827 kb on - strand, within CCNA_02160 at 2315.844 kb on - strand, within CCNA_02160 at 2315.948 kb on + strand at 2316.005 kb on + strand, within CCNA_02160 at 2316.024 kb on + strand, within CCNA_02160 at 2316.041 kb on + strand, within CCNA_02160 at 2316.046 kb on + strand at 2316.051 kb on + strand at 2316.051 kb on - strand at 2316.054 kb on - strand at 2316.054 kb on - strand at 2316.068 kb on + strand at 2316.417 kb on + strand, within CCNA_02161 at 2316.441 kb on - strand, within CCNA_02161 at 2316.449 kb on - strand, within CCNA_02161 at 2316.451 kb on + strand, within CCNA_02161
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 2,313,965 + -0.2 2,314,001 - -0.4 2,314,021 + -1.3 2,314,036 + -1.5 2,314,036 + +0.7 2,314,046 + -0.4 2,314,067 - CCNA_02158 0.10 -0.7 2,314,075 - CCNA_02158 0.11 +1.5 2,314,077 - CCNA_02158 0.11 +0.6 2,314,077 - CCNA_02158 0.11 +2.5 2,314,160 - CCNA_02158 0.20 -0.8 2,314,176 + CCNA_02158 0.22 -0.3 2,314,205 + CCNA_02158 0.25 -1.0 2,314,284 + CCNA_02158 0.33 -0.2 2,314,286 + CCNA_02158 0.33 -1.2 2,314,295 + CCNA_02158 0.34 +0.4 2,314,314 + CCNA_02158 0.36 +1.4 2,314,332 - CCNA_02158 0.38 -0.5 2,314,339 + CCNA_02158 0.39 -1.1 2,314,344 + CCNA_02158 0.39 -0.8 2,314,353 - CCNA_02158 0.40 -2.0 2,314,354 - CCNA_02158 0.40 -0.4 2,314,375 + CCNA_02158 0.43 +2.0 2,314,375 + CCNA_02158 0.43 -0.4 2,314,397 - CCNA_02158 0.45 +0.0 2,314,427 + CCNA_02158 0.48 -1.5 2,314,444 - CCNA_02158 0.50 -0.6 2,314,449 - CCNA_02158 0.50 -0.7 2,314,457 - CCNA_02158 0.51 -2.9 2,314,485 + CCNA_02158 0.54 -0.6 2,314,513 + CCNA_02158 0.57 -2.3 2,314,522 - CCNA_02158 0.58 -0.4 2,314,557 + CCNA_02158 0.62 +0.1 2,314,565 - CCNA_02158 0.62 -0.5 2,314,565 - CCNA_02158 0.62 -0.9 2,314,580 - CCNA_02158 0.64 -0.5 2,314,607 + CCNA_02158 0.67 -0.8 2,314,619 - CCNA_02158 0.68 -1.1 2,314,639 + CCNA_02158 0.70 +0.8 2,314,639 + CCNA_02158 0.70 +0.0 2,314,639 + CCNA_02158 0.70 +0.4 2,314,639 + CCNA_02158 0.70 -1.4 2,314,639 + +3.1 2,314,647 - CCNA_02158 0.71 +1.1 2,314,650 + CCNA_02158 0.71 -0.3 2,314,650 + CCNA_02158 0.71 +1.6 2,314,658 - CCNA_02158 0.72 -0.1 2,314,670 + CCNA_02158 0.73 +0.4 2,314,670 + CCNA_02158 0.73 +0.3 2,314,673 - CCNA_02158 0.74 +1.0 2,314,673 - CCNA_02158 0.74 +0.8 2,314,673 - CCNA_02158 0.74 +0.3 2,314,673 - CCNA_02158 0.74 -0.2 2,314,675 + CCNA_02158 0.74 -0.9 2,314,678 - CCNA_02158 0.74 +0.3 2,314,678 - CCNA_02158 0.74 -0.4 2,314,683 - CCNA_02158 0.75 +0.3 2,314,683 - CCNA_02158 0.75 -0.4 2,314,689 + CCNA_02158 0.75 -0.6 2,314,693 + CCNA_02158 0.76 -0.4 2,314,695 - CCNA_02158 0.76 +0.5 2,314,695 - CCNA_02158 0.76 -0.9 2,314,741 - CCNA_02158 0.81 +0.6 2,314,744 + CCNA_02158 0.81 +0.0 2,314,747 - CCNA_02158 0.81 -0.7 2,314,752 - CCNA_02158 0.82 -0.3 2,314,765 - CCNA_02158 0.83 +0.6 2,314,771 - CCNA_02158 0.84 -0.4 2,314,805 + CCNA_02158 0.87 +0.9 2,314,805 + CCNA_02158 0.87 -0.7 2,314,805 + CCNA_02158 0.87 -0.3 2,314,806 - CCNA_02158 0.88 -1.7 2,314,813 - CCNA_02158 0.88 +1.7 2,314,813 - CCNA_02158 0.88 +0.1 2,314,813 - CCNA_02158 0.88 +1.1 2,314,852 - +1.3 2,314,902 + +0.0 2,314,902 + +0.0 2,314,991 - CCNA_02159 0.13 -0.8 2,315,011 - CCNA_02159 0.16 +0.3 2,315,011 - CCNA_02159 0.16 -0.1 2,315,011 - CCNA_02159 0.16 -0.9 2,315,011 - CCNA_02159 0.16 -0.7 2,315,016 - CCNA_02159 0.17 -1.2 2,315,034 + CCNA_02159 0.20 +0.3 2,315,068 - CCNA_02159 0.26 +0.5 2,315,070 + CCNA_02159 0.27 +1.5 2,315,091 + CCNA_02159 0.31 +0.1 2,315,099 - CCNA_02159 0.32 -0.9 2,315,099 - CCNA_02159 0.32 -1.2 2,315,174 - CCNA_02159 0.46 +0.6 2,315,190 + CCNA_02159 0.48 -2.0 2,315,198 + CCNA_02159 0.50 +0.6 2,315,198 + CCNA_02159 0.50 +1.4 2,315,198 - CCNA_02159 0.50 -0.1 2,315,206 - CCNA_02159 0.51 +0.4 2,315,206 - CCNA_02159 0.51 -0.3 2,315,206 - CCNA_02159 0.51 -0.6 2,315,219 - CCNA_02159 0.54 -0.9 2,315,221 - CCNA_02159 0.54 -1.5 2,315,245 - CCNA_02159 0.58 +0.2 2,315,318 - CCNA_02159 0.72 -2.9 2,315,354 - CCNA_02159 0.78 -1.4 2,315,383 + CCNA_02159 0.83 +0.3 2,315,388 + CCNA_02159 0.84 -0.4 2,315,388 + CCNA_02159 0.84 -0.2 2,315,396 - CCNA_02159 0.86 -0.7 2,315,396 - CCNA_02159 0.86 +0.4 2,315,396 - CCNA_02159 0.86 -1.2 2,315,396 - CCNA_02159 0.86 +0.4 2,315,396 - CCNA_02159 0.86 -0.9 2,315,396 - CCNA_02159 0.86 -0.7 2,315,396 - CCNA_02159 0.86 -0.3 2,315,396 - CCNA_02159 0.86 -0.1 2,315,400 + CCNA_02159 0.86 -0.2 2,315,425 - -1.6 2,315,432 + -1.4 2,315,588 + -0.0 2,315,633 + -0.1 2,315,641 - CCNA_02160 0.11 -0.3 2,315,641 - CCNA_02160 0.11 +1.2 2,315,667 - CCNA_02160 0.16 -0.6 2,315,690 + CCNA_02160 0.20 +0.8 2,315,744 - CCNA_02160 0.31 -0.1 2,315,801 - CCNA_02160 0.42 -0.5 2,315,827 - CCNA_02160 0.47 +0.0 2,315,844 - CCNA_02160 0.51 +0.6 2,315,948 + +2.1 2,316,005 + CCNA_02160 0.82 +1.3 2,316,024 + CCNA_02160 0.86 -1.5 2,316,041 + CCNA_02160 0.89 +0.4 2,316,046 + -0.9 2,316,051 + +0.6 2,316,051 - +0.8 2,316,054 - -0.2 2,316,054 - +1.3 2,316,068 + +0.3 2,316,417 + CCNA_02161 0.28 -0.7 2,316,441 - CCNA_02161 0.32 +0.2 2,316,449 - CCNA_02161 0.33 -0.3 2,316,451 + CCNA_02161 0.33 -1.0
Or see this region's nucleotide sequence