Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01632

Experiment: PYE with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01630 and CCNA_01632 are separated by 303 nucleotidesCCNA_01632 and CCNA_01633 are separated by 149 nucleotides CCNA_01630: CCNA_01630 - ribonuclease III, at 1,750,026 to 1,750,721 _01630 CCNA_01632: CCNA_01632 - hypothetical protein, at 1,751,025 to 1,751,486 _01632 CCNA_01633: CCNA_01633 - GTP-binding protein era, at 1,751,636 to 1,752,586 _01633 Position (kb) 1751 1752Strain fitness (log2 ratio) -2 -1 0 1 2at 1750.697 kb on + strandat 1750.697 kb on + strandat 1750.716 kb on + strandat 1750.716 kb on + strandat 1750.716 kb on + strandat 1750.724 kb on - strandat 1750.724 kb on - strandat 1750.797 kb on + strandat 1750.820 kb on + strandat 1750.820 kb on + strandat 1750.908 kb on - strandat 1750.929 kb on - strandat 1750.934 kb on - strandat 1750.973 kb on + strandat 1750.981 kb on - strandat 1750.981 kb on - strandat 1751.002 kb on - strandat 1751.051 kb on + strandat 1751.066 kb on + strandat 1751.085 kb on + strand, within CCNA_01632at 1751.096 kb on + strand, within CCNA_01632at 1751.190 kb on - strand, within CCNA_01632at 1751.215 kb on - strand, within CCNA_01632at 1751.232 kb on + strand, within CCNA_01632at 1751.238 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.288 kb on + strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.296 kb on - strand, within CCNA_01632at 1751.329 kb on - strand, within CCNA_01632at 1751.350 kb on + strand, within CCNA_01632at 1751.405 kb on + strand, within CCNA_01632at 1751.413 kb on - strand, within CCNA_01632at 1751.418 kb on - strand, within CCNA_01632at 1751.429 kb on - strand, within CCNA_01632at 1751.454 kb on + strandat 1751.454 kb on + strandat 1751.454 kb on + strandat 1751.454 kb on + strandat 1751.454 kb on + strandat 1751.462 kb on - strandat 1751.462 kb on - strandat 1751.462 kb on - strandat 1751.462 kb on - strandat 1751.475 kb on - strandat 1751.478 kb on - strandat 1751.492 kb on - strandat 1751.493 kb on + strandat 1751.509 kb on - strandat 1751.526 kb on - strandat 1751.526 kb on - strandat 1751.526 kb on - strandat 1751.528 kb on + strandat 1751.583 kb on + strandat 1751.591 kb on - strandat 1751.599 kb on - strandat 1751.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM
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1,750,697 + +2.0
1,750,697 + +0.1
1,750,716 + -0.2
1,750,716 + -1.3
1,750,716 + +0.6
1,750,724 - -0.2
1,750,724 - +0.9
1,750,797 + +0.0
1,750,820 + +0.3
1,750,820 + -1.0
1,750,908 - -0.2
1,750,929 - +1.1
1,750,934 - -0.7
1,750,973 + +0.9
1,750,981 - -1.0
1,750,981 - -0.0
1,751,002 - +1.8
1,751,051 + -1.4
1,751,066 + -0.1
1,751,085 + CCNA_01632 0.13 -2.2
1,751,096 + CCNA_01632 0.15 +0.6
1,751,190 - CCNA_01632 0.36 +1.4
1,751,215 - CCNA_01632 0.41 +1.4
1,751,232 + CCNA_01632 0.45 -1.0
1,751,238 + CCNA_01632 0.46 +1.0
1,751,288 + CCNA_01632 0.57 -0.3
1,751,288 + CCNA_01632 0.57 +0.1
1,751,296 - CCNA_01632 0.59 -0.2
1,751,296 - CCNA_01632 0.59 +1.2
1,751,296 - CCNA_01632 0.59 -0.5
1,751,296 - CCNA_01632 0.59 +1.4
1,751,296 - CCNA_01632 0.59 +0.4
1,751,296 - CCNA_01632 0.59 -1.1
1,751,296 - CCNA_01632 0.59 +0.6
1,751,329 - CCNA_01632 0.66 -0.0
1,751,350 + CCNA_01632 0.70 -0.1
1,751,405 + CCNA_01632 0.82 -0.7
1,751,413 - CCNA_01632 0.84 -0.7
1,751,418 - CCNA_01632 0.85 -1.3
1,751,429 - CCNA_01632 0.87 -1.7
1,751,454 + +0.6
1,751,454 + +1.3
1,751,454 + +1.9
1,751,454 + +1.2
1,751,454 + +0.2
1,751,462 - +2.2
1,751,462 - +0.4
1,751,462 - -2.7
1,751,462 - +1.0
1,751,475 - -1.2
1,751,478 - -0.4
1,751,492 - +0.4
1,751,493 + -1.0
1,751,509 - -0.8
1,751,526 - -0.5
1,751,526 - +0.0
1,751,526 - +0.8
1,751,528 + +0.9
1,751,583 + -0.7
1,751,591 - -0.9
1,751,599 - -0.2
1,751,626 - +0.0

Or see this region's nucleotide sequence