Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00589

Experiment: PYE with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00587 and CCNA_00588 are separated by 173 nucleotidesCCNA_00588 and CCNA_00589 are separated by 7 nucleotidesCCNA_00589 and CCNA_00590 are separated by 47 nucleotides CCNA_00587: CCNA_00587 - alpha/beta hydrolase family protein, at 615,934 to 617,430 _00587 CCNA_00588: CCNA_00588 - SapA domain protein, at 617,604 to 617,843 _00588 CCNA_00589: CCNA_00589 - hypothetical protein, at 617,851 to 618,567 _00589 CCNA_00590: CCNA_00590 - FixC-family flavoprotein dehydrogenase, at 618,615 to 619,724 _00590 Position (kb) 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2 3at 616.884 kb on + strand, within CCNA_00587at 616.884 kb on + strand, within CCNA_00587at 616.885 kb on - strand, within CCNA_00587at 616.892 kb on + strand, within CCNA_00587at 616.973 kb on - strand, within CCNA_00587at 617.025 kb on + strand, within CCNA_00587at 617.066 kb on + strand, within CCNA_00587at 617.074 kb on - strand, within CCNA_00587at 617.079 kb on - strand, within CCNA_00587at 617.084 kb on - strand, within CCNA_00587at 617.101 kb on + strand, within CCNA_00587at 617.101 kb on + strand, within CCNA_00587at 617.106 kb on + strand, within CCNA_00587at 617.144 kb on + strand, within CCNA_00587at 617.185 kb on + strand, within CCNA_00587at 617.235 kb on - strand, within CCNA_00587at 617.264 kb on - strand, within CCNA_00587at 617.264 kb on - strand, within CCNA_00587at 617.264 kb on - strand, within CCNA_00587at 617.282 kb on - strandat 617.333 kb on + strandat 617.341 kb on + strandat 617.341 kb on + strandat 617.341 kb on + strandat 617.341 kb on + strandat 617.342 kb on + strandat 617.349 kb on - strandat 617.349 kb on - strandat 617.380 kb on + strandat 617.420 kb on + strandat 617.423 kb on - strandat 617.442 kb on + strandat 617.465 kb on - strandat 617.493 kb on + strandat 617.499 kb on - strandat 617.501 kb on - strandat 617.501 kb on - strandat 617.509 kb on - strandat 617.514 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.521 kb on + strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.529 kb on - strandat 617.569 kb on + strandat 617.584 kb on - strandat 617.596 kb on - strandat 617.596 kb on - strandat 617.642 kb on - strand, within CCNA_00588at 617.648 kb on + strand, within CCNA_00588at 617.727 kb on - strand, within CCNA_00588at 617.869 kb on - strandat 617.873 kb on + strandat 617.875 kb on - strandat 617.881 kb on - strandat 617.933 kb on - strand, within CCNA_00589at 617.935 kb on + strand, within CCNA_00589at 617.963 kb on - strand, within CCNA_00589at 617.970 kb on + strand, within CCNA_00589at 617.989 kb on + strand, within CCNA_00589at 617.992 kb on - strand, within CCNA_00589at 617.993 kb on - strand, within CCNA_00589at 618.002 kb on - strand, within CCNA_00589at 618.031 kb on + strand, within CCNA_00589at 618.037 kb on - strand, within CCNA_00589at 618.039 kb on - strand, within CCNA_00589at 618.066 kb on + strand, within CCNA_00589at 618.082 kb on - strand, within CCNA_00589at 618.117 kb on + strand, within CCNA_00589at 618.117 kb on + strand, within CCNA_00589at 618.125 kb on - strand, within CCNA_00589at 618.136 kb on + strand, within CCNA_00589at 618.157 kb on + strand, within CCNA_00589at 618.160 kb on + strand, within CCNA_00589at 618.172 kb on - strand, within CCNA_00589at 618.205 kb on - strand, within CCNA_00589at 618.218 kb on + strand, within CCNA_00589at 618.223 kb on + strand, within CCNA_00589at 618.231 kb on - strand, within CCNA_00589at 618.231 kb on - strand, within CCNA_00589at 618.247 kb on - strand, within CCNA_00589at 618.252 kb on - strand, within CCNA_00589at 618.312 kb on + strand, within CCNA_00589at 618.378 kb on - strand, within CCNA_00589at 618.386 kb on - strand, within CCNA_00589at 618.392 kb on + strand, within CCNA_00589at 618.510 kb on - strandat 618.520 kb on - strandat 618.545 kb on - strandat 618.545 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.546 kb on - strandat 618.551 kb on - strandat 618.575 kb on + strandat 618.595 kb on + strandat 618.601 kb on + strandat 618.611 kb on - strandat 618.627 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.670 kb on + strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.678 kb on - strandat 618.694 kb on + strandat 618.701 kb on - strandat 618.733 kb on - strand, within CCNA_00590at 618.733 kb on - strand, within CCNA_00590at 618.797 kb on - strand, within CCNA_00590at 618.797 kb on - strand, within CCNA_00590at 618.807 kb on + strand, within CCNA_00590at 618.814 kb on + strand, within CCNA_00590at 618.822 kb on - strand, within CCNA_00590at 618.826 kb on + strand, within CCNA_00590at 618.838 kb on - strand, within CCNA_00590at 618.843 kb on + strand, within CCNA_00590at 618.890 kb on + strand, within CCNA_00590at 618.898 kb on - strand, within CCNA_00590at 619.006 kb on - strand, within CCNA_00590at 619.010 kb on + strand, within CCNA_00590at 619.015 kb on + strand, within CCNA_00590at 619.018 kb on - strand, within CCNA_00590at 619.038 kb on + strand, within CCNA_00590at 619.061 kb on - strand, within CCNA_00590at 619.076 kb on + strand, within CCNA_00590at 619.076 kb on + strand, within CCNA_00590at 619.076 kb on + strand, within CCNA_00590at 619.076 kb on + strand, within CCNA_00590at 619.076 kb on + strand, within CCNA_00590at 619.079 kb on - strand, within CCNA_00590at 619.079 kb on - strand, within CCNA_00590at 619.081 kb on + strand, within CCNA_00590at 619.084 kb on - strand, within CCNA_00590at 619.084 kb on - strand, within CCNA_00590at 619.084 kb on - strand, within CCNA_00590at 619.084 kb on - strand, within CCNA_00590at 619.089 kb on - strand, within CCNA_00590at 619.089 kb on - strand, within CCNA_00590at 619.096 kb on + strand, within CCNA_00590at 619.115 kb on - strand, within CCNA_00590at 619.128 kb on - strand, within CCNA_00590at 619.128 kb on - strand, within CCNA_00590at 619.160 kb on - strand, within CCNA_00590at 619.160 kb on - strand, within CCNA_00590at 619.160 kb on - strand, within CCNA_00590at 619.167 kb on + strand, within CCNA_00590at 619.175 kb on - strand, within CCNA_00590at 619.190 kb on + strand, within CCNA_00590at 619.193 kb on - strand, within CCNA_00590at 619.198 kb on + strand, within CCNA_00590at 619.206 kb on - strand, within CCNA_00590at 619.229 kb on - strand, within CCNA_00590at 619.303 kb on - strand, within CCNA_00590at 619.303 kb on - strand, within CCNA_00590at 619.311 kb on - strand, within CCNA_00590at 619.341 kb on + strand, within CCNA_00590at 619.341 kb on + strand, within CCNA_00590at 619.341 kb on + strand, within CCNA_00590at 619.349 kb on - strand, within CCNA_00590at 619.349 kb on - strand, within CCNA_00590at 619.349 kb on - strand, within CCNA_00590at 619.359 kb on + strand, within CCNA_00590at 619.367 kb on - strand, within CCNA_00590at 619.419 kb on + strand, within CCNA_00590at 619.427 kb on - strand, within CCNA_00590at 619.430 kb on + strand, within CCNA_00590at 619.430 kb on + strand, within CCNA_00590at 619.430 kb on + strand, within CCNA_00590at 619.430 kb on + strand, within CCNA_00590at 619.438 kb on - strand, within CCNA_00590at 619.438 kb on - strand, within CCNA_00590at 619.438 kb on - strand, within CCNA_00590at 619.438 kb on - strand, within CCNA_00590at 619.484 kb on - strand, within CCNA_00590at 619.519 kb on - strand, within CCNA_00590at 619.555 kb on + strand, within CCNA_00590

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM
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616,884 + CCNA_00587 0.63 +1.3
616,884 + CCNA_00587 0.63 -1.2
616,885 - CCNA_00587 0.64 +0.7
616,892 + CCNA_00587 0.64 -1.1
616,973 - CCNA_00587 0.69 +1.8
617,025 + CCNA_00587 0.73 -1.3
617,066 + CCNA_00587 0.76 -0.5
617,074 - CCNA_00587 0.76 +0.9
617,079 - CCNA_00587 0.76 -0.9
617,084 - CCNA_00587 0.77 +0.1
617,101 + CCNA_00587 0.78 +0.4
617,101 + CCNA_00587 0.78 -0.1
617,106 + CCNA_00587 0.78 -1.3
617,144 + CCNA_00587 0.81 +0.5
617,185 + CCNA_00587 0.84 -0.9
617,235 - CCNA_00587 0.87 -0.0
617,264 - CCNA_00587 0.89 +0.3
617,264 - CCNA_00587 0.89 +1.1
617,264 - CCNA_00587 0.89 +0.6
617,282 - -0.2
617,333 + +2.0
617,341 + +3.0
617,341 + +0.6
617,341 + +1.1
617,341 + +0.5
617,342 + +1.5
617,349 - -0.3
617,349 - -0.6
617,380 + +0.1
617,420 + +0.4
617,423 - +1.0
617,442 + +0.4
617,465 - +0.7
617,493 + -0.3
617,499 - -0.2
617,501 - +0.6
617,501 - +1.9
617,509 - +1.1
617,514 + +0.3
617,521 + +1.5
617,521 + -2.1
617,521 + -2.0
617,521 + +0.8
617,521 + -0.6
617,521 + -0.3
617,529 - +1.6
617,529 - +1.0
617,529 - -1.7
617,569 + -0.8
617,584 - +0.4
617,596 - -0.5
617,596 - -0.6
617,642 - CCNA_00588 0.16 +2.0
617,648 + CCNA_00588 0.18 -1.1
617,727 - CCNA_00588 0.51 -2.5
617,869 - -0.7
617,873 + +1.3
617,875 - -0.2
617,881 - -0.5
617,933 - CCNA_00589 0.11 -1.1
617,935 + CCNA_00589 0.12 -0.4
617,963 - CCNA_00589 0.16 +0.6
617,970 + CCNA_00589 0.17 +1.0
617,989 + CCNA_00589 0.19 +0.2
617,992 - CCNA_00589 0.20 -0.2
617,993 - CCNA_00589 0.20 -0.6
618,002 - CCNA_00589 0.21 -1.0
618,031 + CCNA_00589 0.25 +0.3
618,037 - CCNA_00589 0.26 -1.0
618,039 - CCNA_00589 0.26 +1.0
618,066 + CCNA_00589 0.30 +0.6
618,082 - CCNA_00589 0.32 +1.7
618,117 + CCNA_00589 0.37 +0.8
618,117 + CCNA_00589 0.37 -0.7
618,125 - CCNA_00589 0.38 +0.3
618,136 + CCNA_00589 0.40 +0.7
618,157 + CCNA_00589 0.43 +1.0
618,160 + CCNA_00589 0.43 -0.7
618,172 - CCNA_00589 0.45 -0.4
618,205 - CCNA_00589 0.49 -0.5
618,218 + CCNA_00589 0.51 -0.7
618,223 + CCNA_00589 0.52 -0.3
618,231 - CCNA_00589 0.53 -1.1
618,231 - CCNA_00589 0.53 +1.4
618,247 - CCNA_00589 0.55 -1.1
618,252 - CCNA_00589 0.56 -0.9
618,312 + CCNA_00589 0.64 -1.7
618,378 - CCNA_00589 0.74 +0.1
618,386 - CCNA_00589 0.75 +1.1
618,392 + CCNA_00589 0.75 +0.8
618,510 - -0.9
618,520 - -1.7
618,545 - -2.1
618,545 - +0.2
618,546 - -0.9
618,546 - +0.2
618,546 - +1.1
618,546 - +1.6
618,551 - +0.8
618,575 + +0.2
618,595 + -0.3
618,601 + -1.5
618,611 - +0.7
618,627 + -0.2
618,670 + -1.0
618,670 + +1.1
618,670 + -0.1
618,670 + +1.1
618,670 + -0.3
618,670 + +1.1
618,678 - +0.6
618,678 - +1.7
618,678 - -0.5
618,678 - -2.1
618,678 - -0.1
618,678 - -0.2
618,678 - -1.3
618,678 - -0.4
618,694 + +1.1
618,701 - -0.5
618,733 - CCNA_00590 0.11 -1.7
618,733 - CCNA_00590 0.11 +1.3
618,797 - CCNA_00590 0.16 -0.3
618,797 - CCNA_00590 0.16 -0.7
618,807 + CCNA_00590 0.17 -0.7
618,814 + CCNA_00590 0.18 -0.6
618,822 - CCNA_00590 0.19 -1.4
618,826 + CCNA_00590 0.19 -0.6
618,838 - CCNA_00590 0.20 +1.4
618,843 + CCNA_00590 0.21 +0.8
618,890 + CCNA_00590 0.25 +0.2
618,898 - CCNA_00590 0.25 -0.6
619,006 - CCNA_00590 0.35 -2.0
619,010 + CCNA_00590 0.36 +0.5
619,015 + CCNA_00590 0.36 -0.3
619,018 - CCNA_00590 0.36 -0.8
619,038 + CCNA_00590 0.38 -0.2
619,061 - CCNA_00590 0.40 +1.7
619,076 + CCNA_00590 0.42 +0.8
619,076 + CCNA_00590 0.42 -0.5
619,076 + CCNA_00590 0.42 +0.2
619,076 + CCNA_00590 0.42 +1.4
619,076 + CCNA_00590 0.42 +1.3
619,079 - CCNA_00590 0.42 -0.3
619,079 - CCNA_00590 0.42 +0.7
619,081 + CCNA_00590 0.42 +0.8
619,084 - CCNA_00590 0.42 +1.0
619,084 - CCNA_00590 0.42 +1.6
619,084 - CCNA_00590 0.42 +0.8
619,084 - CCNA_00590 0.42 -0.0
619,089 - CCNA_00590 0.43 -1.2
619,089 - CCNA_00590 0.43 -0.6
619,096 + CCNA_00590 0.43 -0.9
619,115 - CCNA_00590 0.45 -1.3
619,128 - CCNA_00590 0.46 -1.7
619,128 - CCNA_00590 0.46 -0.9
619,160 - CCNA_00590 0.49 -0.7
619,160 - CCNA_00590 0.49 -0.5
619,160 - CCNA_00590 0.49 -1.1
619,167 + CCNA_00590 0.50 +0.0
619,175 - CCNA_00590 0.50 -0.4
619,190 + CCNA_00590 0.52 -0.6
619,193 - CCNA_00590 0.52 +1.3
619,198 + CCNA_00590 0.53 -0.5
619,206 - CCNA_00590 0.53 -0.3
619,229 - CCNA_00590 0.55 -0.2
619,303 - CCNA_00590 0.62 -0.3
619,303 - CCNA_00590 0.62 -1.2
619,311 - CCNA_00590 0.63 -1.0
619,341 + CCNA_00590 0.65 -0.9
619,341 + CCNA_00590 0.65 -1.1
619,341 + CCNA_00590 0.65 -0.6
619,349 - CCNA_00590 0.66 +0.8
619,349 - CCNA_00590 0.66 -1.1
619,349 - CCNA_00590 0.66 +0.4
619,359 + CCNA_00590 0.67 +0.3
619,367 - CCNA_00590 0.68 -0.6
619,419 + CCNA_00590 0.72 +0.4
619,427 - CCNA_00590 0.73 -1.3
619,430 + CCNA_00590 0.73 -0.5
619,430 + CCNA_00590 0.73 +0.5
619,430 + CCNA_00590 0.73 -0.7
619,430 + CCNA_00590 0.73 +0.2
619,438 - CCNA_00590 0.74 -0.7
619,438 - CCNA_00590 0.74 -1.0
619,438 - CCNA_00590 0.74 -1.9
619,438 - CCNA_00590 0.74 +0.4
619,484 - CCNA_00590 0.78 +1.1
619,519 - CCNA_00590 0.81 +0.2
619,555 + CCNA_00590 0.85 +0.9

Or see this region's nucleotide sequence