Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00534 and CCNA_00535 are separated by 42 nucleotides CCNA_00535 and CCNA_00536 are separated by 293 nucleotides CCNA_00536 and CCNA_00537 are separated by 113 nucleotides
CCNA_00534: CCNA_00534 - hypothetical protein, at 546,314 to 547,336
_00534
CCNA_00535: CCNA_00535 - hypothetical protein, at 547,379 to 547,537
_00535
CCNA_00536: CCNA_00536 - DNA-directed RNA polymerase beta chain, at 547,831 to 551,901
_00536
CCNA_00537: CCNA_00537 - DNA-directed RNA polymerase beta, at 552,015 to 556,205
_00537
Position (kb) 547
548
549
550
551
552 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 546.904 kb on + strand, within CCNA_00534 at 546.928 kb on - strand, within CCNA_00534 at 546.931 kb on + strand, within CCNA_00534 at 546.931 kb on + strand, within CCNA_00534 at 546.935 kb on + strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.939 kb on - strand, within CCNA_00534 at 546.950 kb on + strand, within CCNA_00534 at 547.055 kb on + strand, within CCNA_00534 at 547.066 kb on - strand, within CCNA_00534 at 547.082 kb on + strand, within CCNA_00534 at 547.082 kb on + strand, within CCNA_00534 at 547.084 kb on + strand, within CCNA_00534 at 547.090 kb on - strand, within CCNA_00534 at 547.096 kb on - strand, within CCNA_00534 at 547.151 kb on - strand, within CCNA_00534 at 547.181 kb on + strand, within CCNA_00534 at 547.181 kb on + strand, within CCNA_00534 at 547.216 kb on - strand, within CCNA_00534 at 547.240 kb on + strand at 547.240 kb on + strand at 547.240 kb on + strand at 547.261 kb on - strand at 547.261 kb on - strand at 547.263 kb on + strand at 547.263 kb on + strand at 547.263 kb on - strand at 547.268 kb on + strand at 547.268 kb on + strand at 547.276 kb on - strand at 547.283 kb on - strand at 547.289 kb on + strand at 547.302 kb on - strand at 547.322 kb on + strand at 547.330 kb on - strand at 547.330 kb on - strand at 547.332 kb on + strand at 547.339 kb on - strand at 547.340 kb on - strand at 547.344 kb on + strand at 547.387 kb on + strand at 547.388 kb on - strand at 547.419 kb on - strand, within CCNA_00535 at 547.500 kb on + strand, within CCNA_00535 at 547.503 kb on + strand, within CCNA_00535 at 547.615 kb on + strand at 551.900 kb on + strand at 551.900 kb on + strand at 551.937 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 546,904 + CCNA_00534 0.58 -1.2 546,928 - CCNA_00534 0.60 +2.3 546,931 + CCNA_00534 0.60 -1.6 546,931 + CCNA_00534 0.60 -0.1 546,935 + CCNA_00534 0.61 -0.9 546,939 - CCNA_00534 0.61 +0.4 546,939 - CCNA_00534 0.61 -1.2 546,939 - CCNA_00534 0.61 +0.4 546,950 + CCNA_00534 0.62 -1.4 547,055 + CCNA_00534 0.72 -1.1 547,066 - CCNA_00534 0.74 -0.8 547,082 + CCNA_00534 0.75 -0.5 547,082 + CCNA_00534 0.75 -1.5 547,084 + CCNA_00534 0.75 +0.5 547,090 - CCNA_00534 0.76 +0.3 547,096 - CCNA_00534 0.76 +2.5 547,151 - CCNA_00534 0.82 +1.1 547,181 + CCNA_00534 0.85 +0.6 547,181 + CCNA_00534 0.85 +1.3 547,216 - CCNA_00534 0.88 +1.1 547,240 + +0.2 547,240 + -0.2 547,240 + +0.5 547,261 - -0.1 547,261 - +1.3 547,263 + +0.2 547,263 + -0.0 547,263 - +1.5 547,268 + -1.2 547,268 + -0.9 547,276 - +0.7 547,283 - -0.3 547,289 + +1.2 547,302 - +0.3 547,322 + -0.7 547,330 - +0.6 547,330 - +0.4 547,332 + -3.1 547,339 - +0.1 547,340 - -0.1 547,344 + +1.1 547,387 + +0.2 547,388 - +1.0 547,419 - CCNA_00535 0.25 -0.8 547,500 + CCNA_00535 0.76 -1.3 547,503 + CCNA_00535 0.78 -1.9 547,615 + -0.8 551,900 + -0.3 551,900 + -0.2 551,937 + -0.2
Or see this region's nucleotide sequence