Experiment: PYE with Nickel (II) chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00385 and CCNA_00386 overlap by 4 nucleotides CCNA_00386 and CCNA_00387 are separated by 129 nucleotides CCNA_00387 and CCNA_00388 are separated by 127 nucleotides
CCNA_00385: CCNA_00385 - multidrug resistance protein, at 401,527 to 402,861
_00385
CCNA_00386: CCNA_00386 - DNA-3-methyladenine glycosylase, at 402,858 to 403,445
_00386
CCNA_00387: CCNA_00387 - hypothetical protein, at 403,575 to 403,997
_00387
CCNA_00388: CCNA_00388 - esterase lipase Family protein, at 404,125 to 405,006
_00388
Position (kb) 402
403
404 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 401.862 kb on + strand, within CCNA_00385 at 401.877 kb on - strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.906 kb on + strand, within CCNA_00385 at 401.914 kb on - strand, within CCNA_00385 at 401.914 kb on - strand, within CCNA_00385 at 401.916 kb on + strand, within CCNA_00385 at 401.916 kb on + strand, within CCNA_00385 at 401.932 kb on + strand, within CCNA_00385 at 401.947 kb on - strand, within CCNA_00385 at 401.961 kb on + strand, within CCNA_00385 at 401.963 kb on + strand, within CCNA_00385 at 401.963 kb on - strand, within CCNA_00385 at 401.968 kb on + strand at 401.990 kb on - strand, within CCNA_00385 at 402.016 kb on - strand, within CCNA_00385 at 402.048 kb on + strand, within CCNA_00385 at 402.055 kb on + strand, within CCNA_00385 at 402.063 kb on - strand, within CCNA_00385 at 402.063 kb on - strand, within CCNA_00385 at 402.075 kb on - strand, within CCNA_00385 at 402.124 kb on - strand, within CCNA_00385 at 402.131 kb on - strand, within CCNA_00385 at 402.139 kb on + strand, within CCNA_00385 at 402.185 kb on - strand, within CCNA_00385 at 402.194 kb on - strand, within CCNA_00385 at 402.229 kb on - strand, within CCNA_00385 at 402.233 kb on - strand, within CCNA_00385 at 402.246 kb on - strand, within CCNA_00385 at 402.279 kb on - strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.284 kb on + strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.292 kb on - strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand, within CCNA_00385 at 402.312 kb on + strand at 402.312 kb on + strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.320 kb on - strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.372 kb on + strand, within CCNA_00385 at 402.377 kb on + strand, within CCNA_00385 at 402.377 kb on + strand, within CCNA_00385 at 402.380 kb on - strand, within CCNA_00385 at 402.385 kb on - strand, within CCNA_00385 at 402.407 kb on + strand, within CCNA_00385 at 402.415 kb on - strand, within CCNA_00385 at 402.415 kb on - strand, within CCNA_00385 at 402.434 kb on + strand, within CCNA_00385 at 402.437 kb on - strand, within CCNA_00385 at 402.449 kb on - strand, within CCNA_00385 at 402.449 kb on - strand, within CCNA_00385 at 402.462 kb on + strand, within CCNA_00385 at 402.494 kb on - strand, within CCNA_00385 at 402.532 kb on + strand, within CCNA_00385 at 402.532 kb on + strand, within CCNA_00385 at 402.540 kb on - strand at 402.551 kb on + strand, within CCNA_00385 at 402.582 kb on - strand, within CCNA_00385 at 402.588 kb on - strand, within CCNA_00385 at 402.588 kb on - strand, within CCNA_00385 at 402.601 kb on + strand, within CCNA_00385 at 402.716 kb on + strand, within CCNA_00385 at 402.727 kb on + strand, within CCNA_00385 at 402.730 kb on - strand at 402.734 kb on + strand at 402.739 kb on + strand at 402.759 kb on - strand at 402.770 kb on + strand at 402.770 kb on + strand at 402.770 kb on + strand at 402.772 kb on + strand at 402.778 kb on - strand at 402.779 kb on + strand at 402.804 kb on + strand at 402.806 kb on + strand at 402.812 kb on - strand at 402.819 kb on + strand at 402.840 kb on - strand at 402.841 kb on + strand at 402.845 kb on - strand at 402.867 kb on + strand at 402.867 kb on + strand at 402.867 kb on + strand at 402.874 kb on + strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.875 kb on - strand at 402.880 kb on - strand at 402.898 kb on + strand at 402.906 kb on - strand at 402.923 kb on + strand, within CCNA_00386 at 402.931 kb on - strand, within CCNA_00386 at 402.935 kb on + strand, within CCNA_00386 at 402.943 kb on + strand, within CCNA_00386 at 402.956 kb on - strand, within CCNA_00386 at 402.976 kb on + strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.991 kb on + strand, within CCNA_00386 at 402.999 kb on - strand, within CCNA_00386 at 402.999 kb on - strand, within CCNA_00386 at 403.000 kb on - strand, within CCNA_00386 at 403.037 kb on - strand, within CCNA_00386 at 403.040 kb on + strand, within CCNA_00386 at 403.070 kb on + strand, within CCNA_00386 at 403.094 kb on - strand, within CCNA_00386 at 403.098 kb on + strand, within CCNA_00386 at 403.118 kb on + strand, within CCNA_00386 at 403.123 kb on + strand, within CCNA_00386 at 403.140 kb on + strand, within CCNA_00386 at 403.177 kb on + strand, within CCNA_00386 at 403.181 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.185 kb on - strand, within CCNA_00386 at 403.275 kb on - strand, within CCNA_00386 at 403.345 kb on + strand, within CCNA_00386 at 403.348 kb on - strand, within CCNA_00386 at 403.372 kb on - strand, within CCNA_00386 at 403.395 kb on - strand at 403.408 kb on - strand at 403.457 kb on + strand at 403.465 kb on - strand at 403.549 kb on - strand at 403.550 kb on + strand at 403.550 kb on + strand at 403.558 kb on - strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.583 kb on + strand at 403.591 kb on - strand at 403.591 kb on - strand at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.639 kb on + strand, within CCNA_00387 at 403.644 kb on + strand, within CCNA_00387 at 403.654 kb on + strand, within CCNA_00387 at 403.657 kb on - strand, within CCNA_00387 at 403.679 kb on + strand, within CCNA_00387 at 403.809 kb on + strand, within CCNA_00387 at 403.827 kb on + strand, within CCNA_00387 at 403.842 kb on + strand, within CCNA_00387 at 403.850 kb on - strand, within CCNA_00387 at 403.866 kb on + strand, within CCNA_00387 at 403.930 kb on + strand, within CCNA_00387 at 403.965 kb on - strand at 403.976 kb on - strand at 403.997 kb on - strand at 404.029 kb on - strand at 404.030 kb on - strand at 404.125 kb on - strand at 404.148 kb on - strand at 404.193 kb on - strand at 404.199 kb on + strand at 404.214 kb on + strand, within CCNA_00388 at 404.222 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.230 kb on - strand, within CCNA_00388 at 404.247 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.290 kb on + strand, within CCNA_00388 at 404.305 kb on - strand, within CCNA_00388 at 404.318 kb on + strand, within CCNA_00388 at 404.346 kb on + strand, within CCNA_00388 at 404.349 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.374 kb on - strand, within CCNA_00388 at 404.407 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.415 kb on - strand, within CCNA_00388 at 404.416 kb on - strand, within CCNA_00388 at 404.435 kb on - strand, within CCNA_00388 at 404.436 kb on - strand, within CCNA_00388 at 404.438 kb on + strand, within CCNA_00388
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM remove 401,862 + CCNA_00385 0.25 -2.0 401,877 - CCNA_00385 0.26 +1.4 401,906 + CCNA_00385 0.28 -0.4 401,906 + CCNA_00385 0.28 -0.9 401,906 + CCNA_00385 0.28 -0.3 401,906 + CCNA_00385 0.28 -1.2 401,906 + CCNA_00385 0.28 -0.5 401,906 + CCNA_00385 0.28 -2.0 401,906 + CCNA_00385 0.28 +0.7 401,906 + CCNA_00385 0.28 +0.6 401,906 + CCNA_00385 0.28 +0.4 401,914 - CCNA_00385 0.29 +1.2 401,914 - CCNA_00385 0.29 +0.6 401,916 + CCNA_00385 0.29 -0.7 401,916 + CCNA_00385 0.29 -1.4 401,932 + CCNA_00385 0.30 -0.3 401,947 - CCNA_00385 0.31 +4.2 401,961 + CCNA_00385 0.33 -1.5 401,963 + CCNA_00385 0.33 -0.2 401,963 - CCNA_00385 0.33 +3.2 401,968 + +4.2 401,990 - CCNA_00385 0.35 -0.4 402,016 - CCNA_00385 0.37 -0.0 402,048 + CCNA_00385 0.39 -0.5 402,055 + CCNA_00385 0.40 -0.5 402,063 - CCNA_00385 0.40 +0.1 402,063 - CCNA_00385 0.40 -0.1 402,075 - CCNA_00385 0.41 -1.8 402,124 - CCNA_00385 0.45 -1.3 402,131 - CCNA_00385 0.45 -0.1 402,139 + CCNA_00385 0.46 +0.4 402,185 - CCNA_00385 0.49 -1.5 402,194 - CCNA_00385 0.50 -0.7 402,229 - CCNA_00385 0.53 +0.5 402,233 - CCNA_00385 0.53 +0.8 402,246 - CCNA_00385 0.54 +1.6 402,279 - CCNA_00385 0.56 +1.2 402,284 + CCNA_00385 0.57 -1.1 402,284 + CCNA_00385 0.57 -0.5 402,284 + CCNA_00385 0.57 -1.4 402,284 + CCNA_00385 0.57 -1.0 402,284 + CCNA_00385 0.57 -1.4 402,284 + CCNA_00385 0.57 -1.1 402,284 + CCNA_00385 0.57 -0.1 402,292 - CCNA_00385 0.57 -1.5 402,292 - CCNA_00385 0.57 +0.2 402,292 - CCNA_00385 0.57 -0.8 402,292 - CCNA_00385 0.57 +1.7 402,292 - CCNA_00385 0.57 -1.8 402,292 - CCNA_00385 0.57 -0.3 402,312 + CCNA_00385 0.59 -0.2 402,312 + CCNA_00385 0.59 -0.4 402,312 + CCNA_00385 0.59 -0.6 402,312 + CCNA_00385 0.59 -1.6 402,312 + CCNA_00385 0.59 -0.1 402,312 + +2.6 402,312 + CCNA_00385 0.59 -2.1 402,320 - CCNA_00385 0.59 -0.0 402,320 - CCNA_00385 0.59 +0.6 402,320 - CCNA_00385 0.59 -0.3 402,320 - CCNA_00385 0.59 +0.2 402,320 - CCNA_00385 0.59 +2.0 402,320 - CCNA_00385 0.59 +0.7 402,372 + CCNA_00385 0.63 -0.2 402,372 + CCNA_00385 0.63 -0.4 402,372 + CCNA_00385 0.63 +2.2 402,372 + CCNA_00385 0.63 -1.7 402,372 + CCNA_00385 0.63 -1.4 402,377 + CCNA_00385 0.64 -0.7 402,377 + CCNA_00385 0.64 -0.8 402,380 - CCNA_00385 0.64 +0.6 402,385 - CCNA_00385 0.64 +1.8 402,407 + CCNA_00385 0.66 +0.1 402,415 - CCNA_00385 0.67 -0.4 402,415 - CCNA_00385 0.67 -0.8 402,434 + CCNA_00385 0.68 +0.2 402,437 - CCNA_00385 0.68 +0.5 402,449 - CCNA_00385 0.69 +1.2 402,449 - CCNA_00385 0.69 +1.5 402,462 + CCNA_00385 0.70 +0.6 402,494 - CCNA_00385 0.72 -0.2 402,532 + CCNA_00385 0.75 +0.3 402,532 + CCNA_00385 0.75 +1.3 402,540 - +3.2 402,551 + CCNA_00385 0.77 -1.7 402,582 - CCNA_00385 0.79 +0.0 402,588 - CCNA_00385 0.79 +0.3 402,588 - CCNA_00385 0.79 +1.2 402,601 + CCNA_00385 0.80 +0.5 402,716 + CCNA_00385 0.89 -1.1 402,727 + CCNA_00385 0.90 -2.4 402,730 - +0.2 402,734 + -0.6 402,739 + +1.3 402,759 - -1.8 402,770 + -0.5 402,770 + +1.2 402,770 + +3.2 402,772 + +1.2 402,778 - -1.4 402,779 + -0.0 402,804 + +1.3 402,806 + -0.7 402,812 - +0.5 402,819 + -1.5 402,840 - +0.2 402,841 + -1.3 402,845 - -1.6 402,867 + -0.4 402,867 + -0.1 402,867 + -0.9 402,874 + +1.7 402,875 - +0.6 402,875 - -0.4 402,875 - +1.6 402,875 - +0.2 402,880 - +1.6 402,898 + +0.1 402,906 - -0.8 402,923 + CCNA_00386 0.11 -1.0 402,931 - CCNA_00386 0.12 +0.7 402,935 + CCNA_00386 0.13 -1.2 402,943 + CCNA_00386 0.14 +0.5 402,956 - CCNA_00386 0.17 +0.7 402,976 + CCNA_00386 0.20 -0.4 402,991 + CCNA_00386 0.23 -0.7 402,991 + CCNA_00386 0.23 -0.8 402,999 - CCNA_00386 0.24 -1.0 402,999 - CCNA_00386 0.24 -1.3 403,000 - CCNA_00386 0.24 -0.5 403,037 - CCNA_00386 0.30 -1.0 403,040 + CCNA_00386 0.31 +0.5 403,070 + CCNA_00386 0.36 -2.0 403,094 - CCNA_00386 0.40 -1.0 403,098 + CCNA_00386 0.41 -0.9 403,118 + CCNA_00386 0.44 -0.5 403,123 + CCNA_00386 0.45 -1.4 403,140 + CCNA_00386 0.48 +0.2 403,177 + CCNA_00386 0.54 +0.2 403,181 - CCNA_00386 0.55 +1.2 403,185 - CCNA_00386 0.56 +0.5 403,185 - CCNA_00386 0.56 -0.5 403,275 - CCNA_00386 0.71 +0.2 403,345 + CCNA_00386 0.83 -0.6 403,348 - CCNA_00386 0.83 +0.0 403,372 - CCNA_00386 0.87 -0.5 403,395 - -1.7 403,408 - -0.8 403,457 + -0.6 403,465 - +1.6 403,549 - +0.6 403,550 + -0.7 403,550 + -1.5 403,558 - +0.7 403,583 + +0.6 403,583 + -1.6 403,583 + +0.5 403,591 - +1.3 403,591 - +0.5 403,639 + CCNA_00387 0.15 +0.6 403,639 + CCNA_00387 0.15 +0.2 403,639 + CCNA_00387 0.15 +0.5 403,639 + CCNA_00387 0.15 -1.5 403,639 + CCNA_00387 0.15 +2.4 403,644 + CCNA_00387 0.16 -0.0 403,654 + CCNA_00387 0.19 -0.7 403,657 - CCNA_00387 0.19 +0.2 403,679 + CCNA_00387 0.25 -1.4 403,809 + CCNA_00387 0.55 -0.6 403,827 + CCNA_00387 0.60 +0.5 403,842 + CCNA_00387 0.63 -1.8 403,850 - CCNA_00387 0.65 -0.5 403,866 + CCNA_00387 0.69 +0.7 403,930 + CCNA_00387 0.84 -1.2 403,965 - -0.6 403,976 - -0.3 403,997 - -1.2 404,029 - +0.8 404,030 - -0.2 404,125 - +0.8 404,148 - -0.3 404,193 - -0.7 404,199 + -0.8 404,214 + CCNA_00388 0.10 +0.8 404,222 - CCNA_00388 0.11 +0.1 404,230 - CCNA_00388 0.12 -0.8 404,230 - CCNA_00388 0.12 -0.5 404,230 - CCNA_00388 0.12 -1.6 404,247 + CCNA_00388 0.14 -2.2 404,290 + CCNA_00388 0.19 +0.6 404,290 + CCNA_00388 0.19 +0.6 404,305 - CCNA_00388 0.20 +0.3 404,318 + CCNA_00388 0.22 -0.9 404,346 + CCNA_00388 0.25 -0.5 404,349 - CCNA_00388 0.25 -1.3 404,374 - CCNA_00388 0.28 +0.1 404,374 - CCNA_00388 0.28 -0.2 404,374 - CCNA_00388 0.28 -1.2 404,407 - CCNA_00388 0.32 -1.2 404,415 - CCNA_00388 0.33 -0.7 404,415 - CCNA_00388 0.33 -1.4 404,416 - CCNA_00388 0.33 -1.2 404,435 - CCNA_00388 0.35 +0.5 404,436 - CCNA_00388 0.35 -0.8 404,438 + CCNA_00388 0.35 -1.2
Or see this region's nucleotide sequence