Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00194

Experiment: PYE with Nickel (II) chloride 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00193 and CCNA_00194 are separated by 1 nucleotidesCCNA_00194 and CCNA_00195 are separated by 141 nucleotidesCCNA_00195 and CCNA_00196 overlap by 4 nucleotides CCNA_00193: CCNA_00193 - 3-isopropylmalate dehydrogenase, at 206,989 to 208,041 _00193 CCNA_00194: CCNA_00194 - Antibiotic biosynthesis monooxygenase family protein, at 208,043 to 208,345 _00194 CCNA_00195: CCNA_00195 - 3-isopropylmalate dehydratase small subunit, at 208,487 to 209,095 _00195 CCNA_00196: CCNA_00196 - 3-isopropylmalate dehydratase large subunit, at 209,092 to 210,531 _00196 Position (kb) 208 209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 207.045 kb on + strandat 207.053 kb on - strandat 207.053 kb on - strandat 207.053 kb on - strandat 207.053 kb on - strandat 207.053 kb on - strandat 207.070 kb on - strandat 207.072 kb on - strandat 207.075 kb on - strandat 207.077 kb on + strandat 207.084 kb on - strandat 207.112 kb on + strand, within CCNA_00193at 207.130 kb on + strand, within CCNA_00193at 207.130 kb on + strand, within CCNA_00193at 207.130 kb on + strand, within CCNA_00193at 207.138 kb on - strand, within CCNA_00193at 207.138 kb on - strand, within CCNA_00193at 207.138 kb on - strand, within CCNA_00193at 207.138 kb on - strand, within CCNA_00193at 207.138 kb on - strand, within CCNA_00193at 207.138 kb on - strand, within CCNA_00193at 207.138 kb on - strand, within CCNA_00193at 207.172 kb on + strand, within CCNA_00193at 207.175 kb on - strand, within CCNA_00193at 207.180 kb on - strand, within CCNA_00193at 207.201 kb on - strand, within CCNA_00193at 207.201 kb on - strand, within CCNA_00193at 207.233 kb on - strand, within CCNA_00193at 207.233 kb on - strand, within CCNA_00193at 207.254 kb on + strand, within CCNA_00193at 207.262 kb on - strand, within CCNA_00193at 207.262 kb on - strand, within CCNA_00193at 207.321 kb on + strand, within CCNA_00193at 207.382 kb on - strand, within CCNA_00193at 207.382 kb on - strand, within CCNA_00193at 207.387 kb on - strand, within CCNA_00193at 207.391 kb on + strand, within CCNA_00193at 207.432 kb on + strand, within CCNA_00193at 207.440 kb on - strand, within CCNA_00193at 207.445 kb on - strand, within CCNA_00193at 207.549 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.563 kb on + strand, within CCNA_00193at 207.571 kb on - strand, within CCNA_00193at 207.571 kb on - strand, within CCNA_00193at 207.606 kb on + strand, within CCNA_00193at 207.614 kb on - strand, within CCNA_00193at 207.672 kb on - strand, within CCNA_00193at 207.677 kb on + strand, within CCNA_00193at 207.677 kb on + strand, within CCNA_00193at 207.685 kb on - strand, within CCNA_00193at 207.685 kb on - strand, within CCNA_00193at 207.687 kb on + strand, within CCNA_00193at 207.712 kb on + strand, within CCNA_00193at 207.720 kb on - strand, within CCNA_00193at 207.728 kb on + strand, within CCNA_00193at 207.764 kb on + strand, within CCNA_00193at 207.774 kb on + strand, within CCNA_00193at 207.775 kb on + strand, within CCNA_00193at 207.778 kb on + strand, within CCNA_00193at 207.782 kb on - strand, within CCNA_00193at 207.835 kb on - strand, within CCNA_00193at 207.844 kb on + strand, within CCNA_00193at 207.844 kb on + strand, within CCNA_00193at 207.844 kb on + strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.852 kb on - strand, within CCNA_00193at 207.859 kb on + strand, within CCNA_00193at 207.867 kb on + strand, within CCNA_00193at 207.914 kb on - strand, within CCNA_00193at 207.925 kb on + strand, within CCNA_00193at 207.944 kb on + strandat 207.944 kb on + strandat 207.944 kb on + strandat 207.945 kb on - strandat 207.951 kb on + strandat 207.951 kb on + strandat 207.951 kb on + strandat 207.952 kb on - strandat 207.959 kb on - strandat 207.959 kb on - strandat 207.959 kb on - strandat 207.959 kb on - strandat 207.979 kb on + strandat 207.996 kb on + strandat 208.004 kb on - strandat 208.004 kb on - strandat 208.004 kb on - strandat 208.040 kb on + strandat 208.227 kb on + strand, within CCNA_00194at 208.227 kb on + strand, within CCNA_00194at 208.234 kb on - strand, within CCNA_00194at 208.241 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.260 kb on + strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.268 kb on - strand, within CCNA_00194at 208.316 kb on - strandat 208.319 kb on + strandat 208.342 kb on - strandat 208.347 kb on - strandat 208.348 kb on - strandat 208.442 kb on + strandat 208.482 kb on - strandat 208.482 kb on - strandat 208.497 kb on + strandat 208.500 kb on - strandat 208.505 kb on - strandat 208.507 kb on + strandat 208.524 kb on + strandat 208.573 kb on + strand, within CCNA_00195at 208.645 kb on + strand, within CCNA_00195at 208.692 kb on + strand, within CCNA_00195at 208.712 kb on - strand, within CCNA_00195at 208.712 kb on - strand, within CCNA_00195at 208.722 kb on - strand, within CCNA_00195at 208.723 kb on + strand, within CCNA_00195at 208.731 kb on - strand, within CCNA_00195at 208.736 kb on - strand, within CCNA_00195at 208.748 kb on - strand, within CCNA_00195at 208.896 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.898 kb on + strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.906 kb on - strand, within CCNA_00195at 208.908 kb on + strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.916 kb on - strand, within CCNA_00195at 208.931 kb on + strand, within CCNA_00195at 208.939 kb on - strand, within CCNA_00195at 208.970 kb on - strand, within CCNA_00195at 208.970 kb on - strand, within CCNA_00195at 208.987 kb on - strand, within CCNA_00195at 208.996 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.001 kb on + strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.009 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.012 kb on - strand, within CCNA_00195at 209.014 kb on + strand, within CCNA_00195at 209.019 kb on + strand, within CCNA_00195at 209.019 kb on + strand, within CCNA_00195at 209.022 kb on - strand, within CCNA_00195at 209.032 kb on - strand, within CCNA_00195at 209.042 kb on - strandat 209.081 kb on + strandat 209.082 kb on + strandat 209.095 kb on - strandat 209.181 kb on - strandat 209.229 kb on - strandat 209.231 kb on - strandat 209.250 kb on + strand, within CCNA_00196at 209.252 kb on - strand, within CCNA_00196at 209.326 kb on - strand, within CCNA_00196at 209.326 kb on - strand, within CCNA_00196at 209.332 kb on + strand, within CCNA_00196at 209.340 kb on - strand, within CCNA_00196

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Nickel (II) chloride 0.3 mM
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207,045 + -0.1
207,053 - -0.3
207,053 - -1.4
207,053 - +0.5
207,053 - -1.3
207,053 - -0.4
207,070 - +0.7
207,072 - -1.3
207,075 - -0.3
207,077 + -1.1
207,084 - +0.0
207,112 + CCNA_00193 0.12 +0.4
207,130 + CCNA_00193 0.13 -1.3
207,130 + CCNA_00193 0.13 -0.3
207,130 + CCNA_00193 0.13 -0.4
207,138 - CCNA_00193 0.14 -0.4
207,138 - CCNA_00193 0.14 -0.5
207,138 - CCNA_00193 0.14 +0.0
207,138 - CCNA_00193 0.14 +1.0
207,138 - CCNA_00193 0.14 -0.2
207,138 - CCNA_00193 0.14 -1.5
207,138 - CCNA_00193 0.14 -1.8
207,172 + CCNA_00193 0.17 +1.2
207,175 - CCNA_00193 0.18 -0.7
207,180 - CCNA_00193 0.18 -1.8
207,201 - CCNA_00193 0.20 -0.7
207,201 - CCNA_00193 0.20 -0.7
207,233 - CCNA_00193 0.23 +0.5
207,233 - CCNA_00193 0.23 -2.0
207,254 + CCNA_00193 0.25 +0.7
207,262 - CCNA_00193 0.26 -1.5
207,262 - CCNA_00193 0.26 +0.6
207,321 + CCNA_00193 0.32 +1.9
207,382 - CCNA_00193 0.37 +0.1
207,382 - CCNA_00193 0.37 +0.0
207,387 - CCNA_00193 0.38 +3.0
207,391 + CCNA_00193 0.38 -0.4
207,432 + CCNA_00193 0.42 -0.6
207,440 - CCNA_00193 0.43 +0.4
207,445 - CCNA_00193 0.43 -1.2
207,549 + CCNA_00193 0.53 -0.1
207,563 + CCNA_00193 0.55 +0.8
207,563 + CCNA_00193 0.55 +0.4
207,563 + CCNA_00193 0.55 -0.5
207,563 + CCNA_00193 0.55 -2.2
207,571 - CCNA_00193 0.55 +0.6
207,571 - CCNA_00193 0.55 -0.9
207,606 + CCNA_00193 0.59 +1.9
207,614 - CCNA_00193 0.59 +0.6
207,672 - CCNA_00193 0.65 -1.3
207,677 + CCNA_00193 0.65 +0.4
207,677 + CCNA_00193 0.65 -0.1
207,685 - CCNA_00193 0.66 -1.1
207,685 - CCNA_00193 0.66 -1.8
207,687 + CCNA_00193 0.66 -1.2
207,712 + CCNA_00193 0.69 -0.4
207,720 - CCNA_00193 0.69 -1.4
207,728 + CCNA_00193 0.70 +1.2
207,764 + CCNA_00193 0.74 +1.0
207,774 + CCNA_00193 0.75 -0.1
207,775 + CCNA_00193 0.75 -0.4
207,778 + CCNA_00193 0.75 +1.4
207,782 - CCNA_00193 0.75 -1.4
207,835 - CCNA_00193 0.80 -2.8
207,844 + CCNA_00193 0.81 -0.9
207,844 + CCNA_00193 0.81 +0.2
207,844 + CCNA_00193 0.81 +1.2
207,852 - CCNA_00193 0.82 -0.2
207,852 - CCNA_00193 0.82 +0.8
207,852 - CCNA_00193 0.82 -1.3
207,852 - CCNA_00193 0.82 -0.6
207,859 + CCNA_00193 0.83 +0.7
207,867 + CCNA_00193 0.83 -0.1
207,914 - CCNA_00193 0.88 -0.4
207,925 + CCNA_00193 0.89 +1.7
207,944 + +0.2
207,944 + -0.4
207,944 + +1.3
207,945 - +0.9
207,951 + -0.9
207,951 + +0.8
207,951 + -0.1
207,952 - -0.8
207,959 - -0.3
207,959 - -0.8
207,959 - +2.0
207,959 - +0.5
207,979 + -2.2
207,996 + +0.3
208,004 - -1.8
208,004 - +1.7
208,004 - +0.1
208,040 + -0.1
208,227 + CCNA_00194 0.61 +0.2
208,227 + CCNA_00194 0.61 -0.8
208,234 - CCNA_00194 0.63 -0.4
208,241 + CCNA_00194 0.65 +1.9
208,260 + CCNA_00194 0.72 -1.7
208,260 + CCNA_00194 0.72 -1.2
208,260 + CCNA_00194 0.72 -1.5
208,260 + CCNA_00194 0.72 -0.4
208,260 + CCNA_00194 0.72 -1.8
208,268 - CCNA_00194 0.74 -0.4
208,268 - CCNA_00194 0.74 -1.4
208,268 - CCNA_00194 0.74 +0.5
208,268 - CCNA_00194 0.74 -0.2
208,316 - +0.1
208,319 + +0.1
208,342 - -0.1
208,347 - +0.4
208,348 - -0.8
208,442 + -0.9
208,482 - -1.2
208,482 - -0.8
208,497 + +0.4
208,500 - +0.0
208,505 - +1.2
208,507 + -2.0
208,524 + -0.6
208,573 + CCNA_00195 0.14 +0.7
208,645 + CCNA_00195 0.26 -1.2
208,692 + CCNA_00195 0.34 -0.4
208,712 - CCNA_00195 0.37 -0.6
208,712 - CCNA_00195 0.37 -0.9
208,722 - CCNA_00195 0.39 -0.3
208,723 + CCNA_00195 0.39 +0.7
208,731 - CCNA_00195 0.40 -0.4
208,736 - CCNA_00195 0.41 -0.9
208,748 - CCNA_00195 0.43 -0.5
208,896 + CCNA_00195 0.67 -0.2
208,898 + CCNA_00195 0.67 -1.3
208,898 + CCNA_00195 0.67 +0.4
208,898 + CCNA_00195 0.67 -1.0
208,898 + CCNA_00195 0.67 +0.7
208,898 + CCNA_00195 0.67 -0.1
208,898 + CCNA_00195 0.67 +0.9
208,906 - CCNA_00195 0.69 +0.2
208,906 - CCNA_00195 0.69 -0.0
208,908 + CCNA_00195 0.69 -0.4
208,916 - CCNA_00195 0.70 -1.7
208,916 - CCNA_00195 0.70 -1.5
208,916 - CCNA_00195 0.70 +0.3
208,931 + CCNA_00195 0.73 -1.3
208,939 - CCNA_00195 0.74 -1.2
208,970 - CCNA_00195 0.79 -0.1
208,970 - CCNA_00195 0.79 +0.7
208,987 - CCNA_00195 0.82 +0.2
208,996 + CCNA_00195 0.84 -0.5
209,001 + CCNA_00195 0.84 -0.5
209,001 + CCNA_00195 0.84 +0.1
209,001 + CCNA_00195 0.84 -0.4
209,009 - CCNA_00195 0.86 -3.1
209,009 - CCNA_00195 0.86 -1.1
209,009 - CCNA_00195 0.86 -1.5
209,012 - CCNA_00195 0.86 +0.4
209,012 - CCNA_00195 0.86 +0.7
209,012 - CCNA_00195 0.86 +1.4
209,014 + CCNA_00195 0.87 +0.4
209,019 + CCNA_00195 0.87 -0.9
209,019 + CCNA_00195 0.87 +0.3
209,022 - CCNA_00195 0.88 -0.4
209,032 - CCNA_00195 0.89 +0.8
209,042 - -0.0
209,081 + +0.1
209,082 + +0.9
209,095 - -0.8
209,181 - +0.3
209,229 - +1.1
209,231 - -0.1
209,250 + CCNA_00196 0.11 -0.7
209,252 - CCNA_00196 0.11 +1.0
209,326 - CCNA_00196 0.16 +0.0
209,326 - CCNA_00196 0.16 +0.9
209,332 + CCNA_00196 0.17 -1.3
209,340 - CCNA_00196 0.17 +0.9

Or see this region's nucleotide sequence