Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS25220 and CA265_RS25225 are separated by 102 nucleotides CA265_RS25225 and CA265_RS25230 are separated by 87 nucleotides
CA265_RS25220: CA265_RS25220 - sulfatase, at 6,138,075 to 6,139,400
_RS25220
CA265_RS25225: CA265_RS25225 - single-stranded-DNA-specific exonuclease RecJ, at 6,139,503 to 6,141,203
_RS25225
CA265_RS25230: CA265_RS25230 - LPS export ABC transporter ATP-binding protein, at 6,141,291 to 6,142,031
_RS25230
Position (kb)
6139
6140
6141
6142 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6138.519 kb on + strand, within CA265_RS25220 at 6138.520 kb on - strand, within CA265_RS25220 at 6138.520 kb on - strand, within CA265_RS25220 at 6138.543 kb on + strand, within CA265_RS25220 at 6138.581 kb on + strand, within CA265_RS25220 at 6138.584 kb on + strand, within CA265_RS25220 at 6138.597 kb on + strand, within CA265_RS25220 at 6138.597 kb on + strand, within CA265_RS25220 at 6138.598 kb on - strand, within CA265_RS25220 at 6138.611 kb on + strand, within CA265_RS25220 at 6138.615 kb on - strand, within CA265_RS25220 at 6138.631 kb on - strand, within CA265_RS25220 at 6138.656 kb on + strand, within CA265_RS25220 at 6138.707 kb on + strand, within CA265_RS25220 at 6138.708 kb on - strand, within CA265_RS25220 at 6138.912 kb on + strand, within CA265_RS25220 at 6138.912 kb on + strand, within CA265_RS25220 at 6138.913 kb on - strand, within CA265_RS25220 at 6138.978 kb on - strand, within CA265_RS25220 at 6138.978 kb on - strand, within CA265_RS25220 at 6138.979 kb on + strand, within CA265_RS25220 at 6138.980 kb on - strand, within CA265_RS25220 at 6138.984 kb on + strand, within CA265_RS25220 at 6139.010 kb on + strand, within CA265_RS25220 at 6139.110 kb on - strand, within CA265_RS25220 at 6139.157 kb on + strand, within CA265_RS25220 at 6139.170 kb on + strand, within CA265_RS25220 at 6139.172 kb on + strand, within CA265_RS25220 at 6139.173 kb on - strand, within CA265_RS25220 at 6139.194 kb on + strand, within CA265_RS25220 at 6139.195 kb on - strand, within CA265_RS25220 at 6139.202 kb on + strand, within CA265_RS25220 at 6139.315 kb on + strand at 6139.321 kb on + strand at 6139.371 kb on + strand at 6139.381 kb on - strand at 6139.405 kb on + strand at 6139.478 kb on + strand at 6139.482 kb on + strand at 6139.500 kb on + strand at 6139.500 kb on + strand at 6141.290 kb on + strand at 6142.032 kb on + strand at 6142.038 kb on - strand at 6142.153 kb on + strand at 6142.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 6,138,519 + CA265_RS25220 0.33 -2.1 6,138,520 - CA265_RS25220 0.34 -0.2 6,138,520 - CA265_RS25220 0.34 -0.9 6,138,543 + CA265_RS25220 0.35 -0.1 6,138,581 + CA265_RS25220 0.38 -1.9 6,138,584 + CA265_RS25220 0.38 +0.3 6,138,597 + CA265_RS25220 0.39 +0.6 6,138,597 + CA265_RS25220 0.39 -2.1 6,138,598 - CA265_RS25220 0.39 -1.3 6,138,611 + CA265_RS25220 0.40 -0.8 6,138,615 - CA265_RS25220 0.41 -1.9 6,138,631 - CA265_RS25220 0.42 -0.7 6,138,656 + CA265_RS25220 0.44 +0.4 6,138,707 + CA265_RS25220 0.48 +0.3 6,138,708 - CA265_RS25220 0.48 +0.7 6,138,912 + CA265_RS25220 0.63 +0.6 6,138,912 + CA265_RS25220 0.63 -0.5 6,138,913 - CA265_RS25220 0.63 -1.1 6,138,978 - CA265_RS25220 0.68 +1.9 6,138,978 - CA265_RS25220 0.68 +0.1 6,138,979 + CA265_RS25220 0.68 -0.3 6,138,980 - CA265_RS25220 0.68 +3.7 6,138,984 + CA265_RS25220 0.69 +0.1 6,139,010 + CA265_RS25220 0.71 +0.1 6,139,110 - CA265_RS25220 0.78 -1.7 6,139,157 + CA265_RS25220 0.82 -1.6 6,139,170 + CA265_RS25220 0.83 -3.2 6,139,172 + CA265_RS25220 0.83 -2.1 6,139,173 - CA265_RS25220 0.83 -0.9 6,139,194 + CA265_RS25220 0.84 -0.5 6,139,195 - CA265_RS25220 0.84 +0.2 6,139,202 + CA265_RS25220 0.85 -0.0 6,139,315 + +0.5 6,139,321 + -1.6 6,139,371 + -1.0 6,139,381 - -0.5 6,139,405 + +0.1 6,139,478 + -0.9 6,139,482 + -1.8 6,139,500 + -0.2 6,139,500 + +1.1 6,141,290 + -0.2 6,142,032 + -1.3 6,142,038 - +0.3 6,142,153 + -2.1 6,142,156 - +0.7
Or see this region's nucleotide sequence