Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14545

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14540 and CA265_RS14545 overlap by 1 nucleotidesCA265_RS14545 and CA265_RS14550 are separated by 53 nucleotidesCA265_RS14550 and CA265_RS14555 are separated by 317 nucleotides CA265_RS14540: CA265_RS14540 - phosphoglycerate mutase (2,3-diphosphoglycerate-independent), at 3,662,389 to 3,663,912 _RS14540 CA265_RS14545: CA265_RS14545 - hypothetical protein, at 3,663,912 to 3,664,442 _RS14545 CA265_RS14550: CA265_RS14550 - hypothetical protein, at 3,664,496 to 3,665,116 _RS14550 CA265_RS14555: CA265_RS14555 - endopeptidase La, at 3,665,434 to 3,667,905 _RS14555 Position (kb) 3663 3664 3665Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3664.002 kb on + strand, within CA265_RS14545at 3664.003 kb on - strand, within CA265_RS14545at 3664.012 kb on + strand, within CA265_RS14545at 3664.196 kb on - strand, within CA265_RS14545at 3664.217 kb on + strand, within CA265_RS14545at 3664.218 kb on - strand, within CA265_RS14545at 3664.218 kb on - strand, within CA265_RS14545at 3664.223 kb on + strand, within CA265_RS14545at 3664.224 kb on - strand, within CA265_RS14545at 3664.301 kb on + strand, within CA265_RS14545at 3664.301 kb on + strand, within CA265_RS14545at 3664.326 kb on + strand, within CA265_RS14545at 3664.345 kb on + strand, within CA265_RS14545at 3664.351 kb on - strand, within CA265_RS14545at 3664.369 kb on - strand, within CA265_RS14545at 3664.369 kb on - strand, within CA265_RS14545at 3664.503 kb on - strandat 3664.547 kb on - strandat 3664.548 kb on + strandat 3664.557 kb on - strandat 3664.571 kb on + strand, within CA265_RS14550at 3664.595 kb on - strandat 3664.677 kb on + strand, within CA265_RS14550at 3664.682 kb on + strand, within CA265_RS14550at 3664.724 kb on - strand, within CA265_RS14550at 3664.783 kb on + strand, within CA265_RS14550at 3664.783 kb on + strand, within CA265_RS14550at 3664.783 kb on + strand, within CA265_RS14550at 3664.783 kb on + strand, within CA265_RS14550at 3664.784 kb on - strand, within CA265_RS14550at 3664.839 kb on + strand, within CA265_RS14550at 3664.894 kb on + strand, within CA265_RS14550at 3664.894 kb on + strand, within CA265_RS14550at 3664.970 kb on - strand, within CA265_RS14550at 3664.992 kb on - strand, within CA265_RS14550at 3664.992 kb on - strand, within CA265_RS14550at 3665.006 kb on - strand, within CA265_RS14550at 3665.044 kb on - strand, within CA265_RS14550at 3665.063 kb on - strandat 3665.127 kb on + strandat 3665.128 kb on - strandat 3665.183 kb on - strandat 3665.254 kb on - strandat 3665.274 kb on + strandat 3665.297 kb on + strandat 3665.318 kb on + strandat 3665.328 kb on - strandat 3665.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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3,664,002 + CA265_RS14545 0.17 +1.4
3,664,003 - CA265_RS14545 0.17 +0.9
3,664,012 + CA265_RS14545 0.19 +1.8
3,664,196 - CA265_RS14545 0.53 +0.5
3,664,217 + CA265_RS14545 0.57 +1.0
3,664,218 - CA265_RS14545 0.58 +1.1
3,664,218 - CA265_RS14545 0.58 +0.9
3,664,223 + CA265_RS14545 0.59 +0.7
3,664,224 - CA265_RS14545 0.59 +1.6
3,664,301 + CA265_RS14545 0.73 +2.0
3,664,301 + CA265_RS14545 0.73 +0.9
3,664,326 + CA265_RS14545 0.78 +1.5
3,664,345 + CA265_RS14545 0.82 -0.2
3,664,351 - CA265_RS14545 0.83 +2.5
3,664,369 - CA265_RS14545 0.86 +1.7
3,664,369 - CA265_RS14545 0.86 +1.6
3,664,503 - +0.5
3,664,547 - -0.4
3,664,548 + +1.8
3,664,557 - +1.2
3,664,571 + CA265_RS14550 0.12 -1.1
3,664,595 - +1.5
3,664,677 + CA265_RS14550 0.29 -0.7
3,664,682 + CA265_RS14550 0.30 -0.4
3,664,724 - CA265_RS14550 0.37 -1.3
3,664,783 + CA265_RS14550 0.46 -1.0
3,664,783 + CA265_RS14550 0.46 -0.7
3,664,783 + CA265_RS14550 0.46 -0.6
3,664,783 + CA265_RS14550 0.46 -1.2
3,664,784 - CA265_RS14550 0.46 -0.8
3,664,839 + CA265_RS14550 0.55 -0.4
3,664,894 + CA265_RS14550 0.64 -0.6
3,664,894 + CA265_RS14550 0.64 -1.5
3,664,970 - CA265_RS14550 0.76 -0.4
3,664,992 - CA265_RS14550 0.80 -1.1
3,664,992 - CA265_RS14550 0.80 -0.6
3,665,006 - CA265_RS14550 0.82 -0.3
3,665,044 - CA265_RS14550 0.88 +1.0
3,665,063 - -0.5
3,665,127 + +0.4
3,665,128 - -1.1
3,665,183 - -1.2
3,665,254 - +0.1
3,665,274 + -0.1
3,665,297 + -1.0
3,665,318 + -0.9
3,665,328 - +0.5
3,665,368 - -3.8

Or see this region's nucleotide sequence