Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS10630 and CA265_RS10635 are separated by 199 nucleotides CA265_RS10635 and CA265_RS10640 are separated by 417 nucleotides
CA265_RS10630: CA265_RS10630 - thioredoxin-disulfide reductase, at 2,628,209 to 2,629,165
_RS10630
CA265_RS10635: CA265_RS10635 - dipeptidase, at 2,629,365 to 2,630,525
_RS10635
CA265_RS10640: CA265_RS10640 - methylcrotonoyl-CoA carboxylase, at 2,630,943 to 2,632,571
_RS10640
Position (kb)
2629
2630
2631 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2629.247 kb on + strand at 2629.247 kb on + strand at 2629.248 kb on - strand at 2629.248 kb on - strand at 2629.326 kb on + strand at 2629.327 kb on - strand at 2629.327 kb on - strand at 2629.330 kb on + strand at 2629.337 kb on - strand at 2629.398 kb on + strand at 2629.425 kb on - strand at 2629.449 kb on - strand at 2629.474 kb on + strand at 2629.487 kb on + strand, within CA265_RS10635 at 2629.488 kb on - strand, within CA265_RS10635 at 2629.488 kb on - strand, within CA265_RS10635 at 2629.564 kb on - strand, within CA265_RS10635 at 2629.635 kb on - strand, within CA265_RS10635 at 2629.667 kb on + strand, within CA265_RS10635 at 2629.669 kb on + strand, within CA265_RS10635 at 2629.670 kb on - strand, within CA265_RS10635 at 2629.702 kb on + strand, within CA265_RS10635 at 2629.702 kb on + strand, within CA265_RS10635 at 2629.740 kb on - strand, within CA265_RS10635 at 2629.766 kb on + strand, within CA265_RS10635 at 2629.847 kb on - strand, within CA265_RS10635 at 2629.847 kb on - strand, within CA265_RS10635 at 2629.850 kb on + strand, within CA265_RS10635 at 2629.856 kb on + strand, within CA265_RS10635 at 2629.856 kb on + strand, within CA265_RS10635 at 2629.864 kb on - strand, within CA265_RS10635 at 2629.864 kb on - strand, within CA265_RS10635 at 2629.870 kb on - strand, within CA265_RS10635 at 2629.870 kb on - strand, within CA265_RS10635 at 2629.878 kb on - strand, within CA265_RS10635 at 2629.884 kb on + strand, within CA265_RS10635 at 2629.901 kb on - strand, within CA265_RS10635 at 2629.926 kb on + strand, within CA265_RS10635 at 2629.966 kb on - strand, within CA265_RS10635 at 2630.068 kb on - strand, within CA265_RS10635 at 2630.078 kb on - strand, within CA265_RS10635 at 2630.132 kb on + strand, within CA265_RS10635 at 2630.133 kb on - strand, within CA265_RS10635 at 2630.174 kb on + strand, within CA265_RS10635 at 2630.246 kb on + strand, within CA265_RS10635 at 2630.249 kb on - strand, within CA265_RS10635 at 2630.325 kb on + strand, within CA265_RS10635 at 2630.349 kb on + strand, within CA265_RS10635 at 2630.416 kb on - strand at 2630.417 kb on + strand at 2630.437 kb on - strand at 2630.570 kb on - strand at 2630.617 kb on + strand at 2630.719 kb on - strand at 2630.740 kb on + strand at 2630.806 kb on + strand at 2630.848 kb on + strand at 2630.850 kb on + strand at 2630.856 kb on - strand at 2630.866 kb on + strand at 2630.877 kb on + strand at 2630.878 kb on - strand at 2630.880 kb on - strand at 2630.883 kb on + strand at 2630.940 kb on + strand at 2630.941 kb on - strand at 2631.047 kb on + strand at 2631.079 kb on + strand at 2631.101 kb on - strand at 2631.104 kb on + strand at 2631.146 kb on + strand, within CA265_RS10640 at 2631.251 kb on - strand, within CA265_RS10640 at 2631.289 kb on + strand, within CA265_RS10640 at 2631.289 kb on + strand, within CA265_RS10640 at 2631.290 kb on - strand, within CA265_RS10640 at 2631.383 kb on + strand, within CA265_RS10640
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,629,247 + -0.8 2,629,247 + -0.5 2,629,248 - +0.6 2,629,248 - +0.7 2,629,326 + -3.0 2,629,327 - -2.6 2,629,327 - -1.6 2,629,330 + -0.0 2,629,337 - -0.3 2,629,398 + +0.7 2,629,425 - +0.0 2,629,449 - +0.6 2,629,474 + +0.3 2,629,487 + CA265_RS10635 0.11 +0.5 2,629,488 - CA265_RS10635 0.11 -0.1 2,629,488 - CA265_RS10635 0.11 -0.2 2,629,564 - CA265_RS10635 0.17 -0.2 2,629,635 - CA265_RS10635 0.23 +0.2 2,629,667 + CA265_RS10635 0.26 -0.3 2,629,669 + CA265_RS10635 0.26 +0.5 2,629,670 - CA265_RS10635 0.26 -1.1 2,629,702 + CA265_RS10635 0.29 -0.5 2,629,702 + CA265_RS10635 0.29 -2.6 2,629,740 - CA265_RS10635 0.32 -0.1 2,629,766 + CA265_RS10635 0.35 +0.0 2,629,847 - CA265_RS10635 0.42 +1.2 2,629,847 - CA265_RS10635 0.42 -0.9 2,629,850 + CA265_RS10635 0.42 +0.4 2,629,856 + CA265_RS10635 0.42 -0.6 2,629,856 + CA265_RS10635 0.42 +1.8 2,629,864 - CA265_RS10635 0.43 +0.0 2,629,864 - CA265_RS10635 0.43 +0.2 2,629,870 - CA265_RS10635 0.43 +1.2 2,629,870 - CA265_RS10635 0.43 -0.6 2,629,878 - CA265_RS10635 0.44 -0.4 2,629,884 + CA265_RS10635 0.45 -1.2 2,629,901 - CA265_RS10635 0.46 +0.8 2,629,926 + CA265_RS10635 0.48 +0.0 2,629,966 - CA265_RS10635 0.52 -0.5 2,630,068 - CA265_RS10635 0.61 +0.3 2,630,078 - CA265_RS10635 0.61 -0.2 2,630,132 + CA265_RS10635 0.66 -0.1 2,630,133 - CA265_RS10635 0.66 +0.9 2,630,174 + CA265_RS10635 0.70 -0.3 2,630,246 + CA265_RS10635 0.76 -1.0 2,630,249 - CA265_RS10635 0.76 +1.8 2,630,325 + CA265_RS10635 0.83 -0.2 2,630,349 + CA265_RS10635 0.85 +0.4 2,630,416 - -0.6 2,630,417 + +1.1 2,630,437 - +0.5 2,630,570 - -0.2 2,630,617 + +0.3 2,630,719 - +0.3 2,630,740 + -0.2 2,630,806 + -0.6 2,630,848 + +0.4 2,630,850 + +0.2 2,630,856 - -0.1 2,630,866 + -0.1 2,630,877 + +0.2 2,630,878 - +0.4 2,630,880 - +0.1 2,630,883 + +0.1 2,630,940 + +0.5 2,630,941 - -0.8 2,631,047 + +0.5 2,631,079 + +1.7 2,631,101 - -0.2 2,631,104 + -2.1 2,631,146 + CA265_RS10640 0.12 -0.3 2,631,251 - CA265_RS10640 0.19 -0.9 2,631,289 + CA265_RS10640 0.21 +0.9 2,631,289 + CA265_RS10640 0.21 -0.3 2,631,290 - CA265_RS10640 0.21 -0.5 2,631,383 + CA265_RS10640 0.27 +0.9
Or see this region's nucleotide sequence