Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22925 and ABZR87_RS22930 are separated by 103 nucleotides ABZR87_RS22930 and ABZR87_RS22935 are separated by 146 nucleotides ABZR87_RS22935 and ABZR87_RS22940 are separated by 96 nucleotides ABZR87_RS22940 and ABZR87_RS22945 are separated by 230 nucleotides
ABZR87_RS22925: ABZR87_RS22925 - YceH family protein, at 1,503,593 to 1,504,291
_RS22925
ABZR87_RS22930: ABZR87_RS22930 - universal stress protein, at 1,504,395 to 1,504,850
_RS22930
ABZR87_RS22935: ABZR87_RS22935 - DUF3293 domain-containing protein, at 1,504,997 to 1,505,455
_RS22935
ABZR87_RS22940: ABZR87_RS22940 - hypothetical protein, at 1,505,552 to 1,506,064
_RS22940
ABZR87_RS22945: ABZR87_RS22945 - cytochrome c oxidase subunit II, at 1,506,295 to 1,507,452
_RS22945
Position (kb) 1504
1505
1506 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1504.179 kb on + strand, within ABZR87_RS22925 at 1504.179 kb on + strand, within ABZR87_RS22925 at 1504.179 kb on + strand, within ABZR87_RS22925 at 1504.180 kb on - strand, within ABZR87_RS22925 at 1504.180 kb on - strand, within ABZR87_RS22925 at 1504.180 kb on - strand, within ABZR87_RS22925 at 1504.180 kb on - strand, within ABZR87_RS22925 at 1504.249 kb on + strand at 1504.250 kb on - strand at 1504.283 kb on + strand at 1504.283 kb on + strand at 1504.285 kb on + strand at 1504.285 kb on + strand at 1504.285 kb on + strand at 1504.309 kb on + strand at 1504.310 kb on - strand at 1504.344 kb on + strand at 1504.345 kb on - strand at 1504.416 kb on + strand at 1504.417 kb on - strand at 1504.683 kb on + strand, within ABZR87_RS22930 at 1504.683 kb on + strand, within ABZR87_RS22930 at 1504.683 kb on + strand, within ABZR87_RS22930 at 1504.683 kb on + strand, within ABZR87_RS22930 at 1504.684 kb on - strand, within ABZR87_RS22930 at 1504.684 kb on - strand, within ABZR87_RS22930 at 1504.699 kb on + strand, within ABZR87_RS22930 at 1504.699 kb on + strand, within ABZR87_RS22930 at 1504.699 kb on + strand, within ABZR87_RS22930 at 1504.702 kb on + strand, within ABZR87_RS22930 at 1504.702 kb on + strand, within ABZR87_RS22930 at 1504.739 kb on + strand, within ABZR87_RS22930 at 1504.740 kb on - strand, within ABZR87_RS22930 at 1504.740 kb on - strand, within ABZR87_RS22930 at 1504.741 kb on + strand, within ABZR87_RS22930 at 1504.741 kb on + strand, within ABZR87_RS22930 at 1504.741 kb on + strand, within ABZR87_RS22930 at 1504.742 kb on - strand, within ABZR87_RS22930 at 1504.742 kb on - strand, within ABZR87_RS22930 at 1504.742 kb on - strand, within ABZR87_RS22930 at 1504.742 kb on - strand, within ABZR87_RS22930 at 1504.742 kb on - strand, within ABZR87_RS22930 at 1504.846 kb on + strand at 1504.846 kb on + strand at 1504.846 kb on + strand at 1504.846 kb on + strand at 1504.846 kb on + strand at 1504.846 kb on + strand at 1504.847 kb on - strand at 1504.847 kb on - strand at 1504.847 kb on - strand at 1504.884 kb on + strand at 1504.884 kb on + strand at 1504.884 kb on + strand at 1504.884 kb on + strand at 1504.884 kb on + strand at 1504.929 kb on + strand at 1504.929 kb on + strand at 1504.929 kb on + strand at 1504.929 kb on + strand at 1504.929 kb on + strand at 1504.930 kb on - strand at 1504.930 kb on - strand at 1505.145 kb on + strand, within ABZR87_RS22935 at 1505.145 kb on + strand, within ABZR87_RS22935 at 1505.146 kb on - strand, within ABZR87_RS22935 at 1505.146 kb on - strand, within ABZR87_RS22935 at 1505.146 kb on - strand, within ABZR87_RS22935 at 1505.146 kb on - strand, within ABZR87_RS22935 at 1505.362 kb on + strand, within ABZR87_RS22935 at 1505.394 kb on + strand, within ABZR87_RS22935 at 1505.394 kb on + strand, within ABZR87_RS22935 at 1505.395 kb on - strand, within ABZR87_RS22935 at 1505.395 kb on - strand, within ABZR87_RS22935 at 1505.422 kb on + strand at 1505.422 kb on + strand at 1505.442 kb on - strand at 1505.442 kb on - strand at 1505.497 kb on + strand at 1505.498 kb on - strand at 1505.498 kb on - strand at 1505.498 kb on - strand at 1505.516 kb on + strand at 1505.517 kb on - strand at 1505.517 kb on - strand at 1505.517 kb on - strand at 1505.532 kb on + strand at 1505.532 kb on + strand at 1505.533 kb on - strand at 1505.533 kb on - strand at 1505.533 kb on - strand at 1505.551 kb on + strand at 1505.551 kb on + strand at 1505.551 kb on + strand at 1505.552 kb on - strand at 1505.765 kb on + strand, within ABZR87_RS22940 at 1505.766 kb on - strand, within ABZR87_RS22940 at 1505.802 kb on + strand, within ABZR87_RS22940 at 1505.803 kb on - strand, within ABZR87_RS22940 at 1505.912 kb on + strand, within ABZR87_RS22940 at 1505.912 kb on + strand, within ABZR87_RS22940 at 1505.912 kb on + strand, within ABZR87_RS22940 at 1505.912 kb on + strand, within ABZR87_RS22940 at 1505.913 kb on - strand, within ABZR87_RS22940 at 1505.913 kb on - strand, within ABZR87_RS22940 at 1505.927 kb on + strand, within ABZR87_RS22940 at 1505.927 kb on + strand, within ABZR87_RS22940 at 1505.927 kb on + strand, within ABZR87_RS22940 at 1505.927 kb on + strand, within ABZR87_RS22940 at 1505.928 kb on - strand, within ABZR87_RS22940 at 1505.928 kb on - strand, within ABZR87_RS22940 at 1506.023 kb on + strand at 1506.023 kb on + strand at 1506.023 kb on + strand at 1506.217 kb on + strand at 1506.217 kb on + strand at 1506.218 kb on - strand at 1506.218 kb on - strand at 1506.218 kb on - strand at 1506.218 kb on - strand at 1506.218 kb on - strand at 1506.218 kb on - strand at 1506.218 kb on - strand at 1506.218 kb on - strand at 1506.249 kb on + strand at 1506.249 kb on + strand at 1506.250 kb on - strand at 1506.260 kb on + strand at 1506.261 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 1,504,179 + ABZR87_RS22925 0.84 -0.4 1,504,179 + ABZR87_RS22925 0.84 +1.7 1,504,179 + ABZR87_RS22925 0.84 +0.2 1,504,180 - ABZR87_RS22925 0.84 -0.8 1,504,180 - ABZR87_RS22925 0.84 +0.6 1,504,180 - ABZR87_RS22925 0.84 +0.3 1,504,180 - ABZR87_RS22925 0.84 +0.4 1,504,249 + +2.2 1,504,250 - -0.3 1,504,283 + -1.7 1,504,283 + +0.4 1,504,285 + -0.1 1,504,285 + -0.1 1,504,285 + +0.0 1,504,309 + -0.2 1,504,310 - +0.4 1,504,344 + +0.7 1,504,345 - +1.0 1,504,416 + +0.8 1,504,417 - -0.5 1,504,683 + ABZR87_RS22930 0.63 +0.5 1,504,683 + ABZR87_RS22930 0.63 -1.2 1,504,683 + ABZR87_RS22930 0.63 -0.5 1,504,683 + ABZR87_RS22930 0.63 -0.2 1,504,684 - ABZR87_RS22930 0.63 +0.1 1,504,684 - ABZR87_RS22930 0.63 +0.0 1,504,699 + ABZR87_RS22930 0.67 +0.0 1,504,699 + ABZR87_RS22930 0.67 -0.4 1,504,699 + ABZR87_RS22930 0.67 -0.4 1,504,702 + ABZR87_RS22930 0.67 -0.0 1,504,702 + ABZR87_RS22930 0.67 +0.5 1,504,739 + ABZR87_RS22930 0.75 +0.0 1,504,740 - ABZR87_RS22930 0.76 +0.1 1,504,740 - ABZR87_RS22930 0.76 +0.7 1,504,741 + ABZR87_RS22930 0.76 -0.4 1,504,741 + ABZR87_RS22930 0.76 -0.0 1,504,741 + ABZR87_RS22930 0.76 -0.8 1,504,742 - ABZR87_RS22930 0.76 -0.1 1,504,742 - ABZR87_RS22930 0.76 +0.4 1,504,742 - ABZR87_RS22930 0.76 +0.1 1,504,742 - ABZR87_RS22930 0.76 -0.2 1,504,742 - ABZR87_RS22930 0.76 -1.6 1,504,846 + -0.6 1,504,846 + +0.1 1,504,846 + +1.1 1,504,846 + +1.0 1,504,846 + +0.3 1,504,846 + +0.5 1,504,847 - +0.0 1,504,847 - +0.6 1,504,847 - +0.1 1,504,884 + +0.3 1,504,884 + -0.3 1,504,884 + +0.0 1,504,884 + -0.9 1,504,884 + +0.4 1,504,929 + -0.4 1,504,929 + -0.7 1,504,929 + +0.3 1,504,929 + +0.5 1,504,929 + +0.4 1,504,930 - +0.4 1,504,930 - +0.1 1,505,145 + ABZR87_RS22935 0.32 -0.1 1,505,145 + ABZR87_RS22935 0.32 +0.0 1,505,146 - ABZR87_RS22935 0.32 -0.6 1,505,146 - ABZR87_RS22935 0.32 -0.4 1,505,146 - ABZR87_RS22935 0.32 -1.0 1,505,146 - ABZR87_RS22935 0.32 -0.3 1,505,362 + ABZR87_RS22935 0.80 -0.2 1,505,394 + ABZR87_RS22935 0.86 -0.8 1,505,394 + ABZR87_RS22935 0.86 +0.1 1,505,395 - ABZR87_RS22935 0.87 -0.5 1,505,395 - ABZR87_RS22935 0.87 -1.3 1,505,422 + -0.6 1,505,422 + +0.9 1,505,442 - -0.2 1,505,442 - +0.3 1,505,497 + -1.3 1,505,498 - +0.4 1,505,498 - -0.3 1,505,498 - -0.8 1,505,516 + -0.3 1,505,517 - -0.8 1,505,517 - +0.1 1,505,517 - -0.6 1,505,532 + -1.0 1,505,532 + +0.5 1,505,533 - -1.4 1,505,533 - -0.4 1,505,533 - +0.4 1,505,551 + +0.1 1,505,551 + -0.1 1,505,551 + -1.1 1,505,552 - +0.9 1,505,765 + ABZR87_RS22940 0.42 -0.8 1,505,766 - ABZR87_RS22940 0.42 -0.6 1,505,802 + ABZR87_RS22940 0.49 +1.0 1,505,803 - ABZR87_RS22940 0.49 +1.0 1,505,912 + ABZR87_RS22940 0.70 +0.3 1,505,912 + ABZR87_RS22940 0.70 -0.2 1,505,912 + ABZR87_RS22940 0.70 -0.1 1,505,912 + ABZR87_RS22940 0.70 +1.2 1,505,913 - ABZR87_RS22940 0.70 +0.9 1,505,913 - ABZR87_RS22940 0.70 +2.4 1,505,927 + ABZR87_RS22940 0.73 -0.2 1,505,927 + ABZR87_RS22940 0.73 +0.7 1,505,927 + ABZR87_RS22940 0.73 -1.2 1,505,927 + ABZR87_RS22940 0.73 +1.1 1,505,928 - ABZR87_RS22940 0.73 -0.1 1,505,928 - ABZR87_RS22940 0.73 +1.0 1,506,023 + +0.8 1,506,023 + -0.4 1,506,023 + +0.2 1,506,217 + -0.6 1,506,217 + -0.2 1,506,218 - +1.9 1,506,218 - +0.4 1,506,218 - +0.4 1,506,218 - -0.5 1,506,218 - -0.3 1,506,218 - -1.0 1,506,218 - -1.5 1,506,218 - +0.7 1,506,249 + +0.5 1,506,249 + +0.3 1,506,250 - -3.0 1,506,260 + -0.3 1,506,261 - +0.7
Or see this region's nucleotide sequence