Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21940

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21930 and ABZR87_RS21935 are separated by 420 nucleotidesABZR87_RS21935 and ABZR87_RS21940 are separated by 44 nucleotidesABZR87_RS21940 and ABZR87_RS21945 overlap by 1 nucleotidesABZR87_RS21945 and ABZR87_RS21950 overlap by 8 nucleotides ABZR87_RS21930: ABZR87_RS21930 - hypothetical protein, at 1,296,577 to 1,297,002 _RS21930 ABZR87_RS21935: ABZR87_RS21935 - DUF6726 family protein, at 1,297,423 to 1,297,590 _RS21935 ABZR87_RS21940: ABZR87_RS21940 - hypothetical protein, at 1,297,635 to 1,298,147 _RS21940 ABZR87_RS21945: ABZR87_RS21945 - glycoside hydrolase family 19 protein, at 1,298,147 to 1,298,710 _RS21945 ABZR87_RS21950: ABZR87_RS21950 - hypothetical protein, at 1,298,703 to 1,299,113 _RS21950 Position (kb) 1297 1298 1299Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.639 kb on - strand, within ABZR87_RS21930at 1296.681 kb on - strand, within ABZR87_RS21930at 1296.718 kb on - strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.719 kb on + strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.720 kb on - strand, within ABZR87_RS21930at 1296.723 kb on + strand, within ABZR87_RS21930at 1296.723 kb on + strand, within ABZR87_RS21930at 1296.724 kb on - strand, within ABZR87_RS21930at 1296.724 kb on - strand, within ABZR87_RS21930at 1296.724 kb on - strand, within ABZR87_RS21930at 1296.762 kb on - strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.800 kb on + strand, within ABZR87_RS21930at 1296.801 kb on - strand, within ABZR87_RS21930at 1296.801 kb on - strand, within ABZR87_RS21930at 1296.839 kb on + strand, within ABZR87_RS21930at 1296.839 kb on + strand, within ABZR87_RS21930at 1296.840 kb on - strand, within ABZR87_RS21930at 1296.840 kb on - strand, within ABZR87_RS21930at 1296.878 kb on + strand, within ABZR87_RS21930at 1296.878 kb on + strand, within ABZR87_RS21930at 1296.920 kb on + strand, within ABZR87_RS21930at 1296.920 kb on + strand, within ABZR87_RS21930at 1296.921 kb on - strand, within ABZR87_RS21930at 1297.629 kb on + strandat 1297.629 kb on + strandat 1297.629 kb on + strandat 1297.629 kb on + strandat 1297.630 kb on - strandat 1297.630 kb on - strandat 1297.630 kb on - strandat 1297.630 kb on - strandat 1297.636 kb on + strandat 1297.879 kb on - strand, within ABZR87_RS21940at 1298.397 kb on + strand, within ABZR87_RS21945at 1298.439 kb on + strand, within ABZR87_RS21945at 1298.440 kb on - strand, within ABZR87_RS21945at 1298.490 kb on + strand, within ABZR87_RS21945at 1298.491 kb on - strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.532 kb on + strand, within ABZR87_RS21945at 1298.533 kb on - strand, within ABZR87_RS21945at 1298.720 kb on + strandat 1298.720 kb on + strandat 1298.721 kb on - strandat 1298.836 kb on + strand, within ABZR87_RS21950at 1298.836 kb on + strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.837 kb on - strand, within ABZR87_RS21950at 1298.896 kb on + strand, within ABZR87_RS21950at 1298.896 kb on + strand, within ABZR87_RS21950at 1299.099 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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1,296,639 - ABZR87_RS21930 0.15 -0.9
1,296,639 - ABZR87_RS21930 0.15 -0.8
1,296,639 - ABZR87_RS21930 0.15 +0.4
1,296,639 - ABZR87_RS21930 0.15 -0.7
1,296,639 - ABZR87_RS21930 0.15 -1.1
1,296,681 - ABZR87_RS21930 0.24 -0.8
1,296,718 - ABZR87_RS21930 0.33 -0.0
1,296,719 + ABZR87_RS21930 0.33 +0.4
1,296,719 + ABZR87_RS21930 0.33 +1.0
1,296,719 + ABZR87_RS21930 0.33 +0.1
1,296,719 + ABZR87_RS21930 0.33 -0.4
1,296,720 - ABZR87_RS21930 0.34 -0.4
1,296,720 - ABZR87_RS21930 0.34 -1.1
1,296,720 - ABZR87_RS21930 0.34 -0.6
1,296,720 - ABZR87_RS21930 0.34 +1.0
1,296,720 - ABZR87_RS21930 0.34 +0.9
1,296,720 - ABZR87_RS21930 0.34 -0.1
1,296,723 + ABZR87_RS21930 0.34 +0.2
1,296,723 + ABZR87_RS21930 0.34 +0.0
1,296,724 - ABZR87_RS21930 0.35 -0.6
1,296,724 - ABZR87_RS21930 0.35 +1.9
1,296,724 - ABZR87_RS21930 0.35 -0.1
1,296,762 - ABZR87_RS21930 0.43 -1.8
1,296,800 + ABZR87_RS21930 0.52 -0.9
1,296,800 + ABZR87_RS21930 0.52 -0.0
1,296,800 + ABZR87_RS21930 0.52 -0.3
1,296,800 + ABZR87_RS21930 0.52 +1.2
1,296,800 + ABZR87_RS21930 0.52 +1.0
1,296,801 - ABZR87_RS21930 0.53 -1.1
1,296,801 - ABZR87_RS21930 0.53 +0.1
1,296,839 + ABZR87_RS21930 0.62 -0.4
1,296,839 + ABZR87_RS21930 0.62 -0.1
1,296,840 - ABZR87_RS21930 0.62 +0.0
1,296,840 - ABZR87_RS21930 0.62 +0.5
1,296,878 + ABZR87_RS21930 0.71 -0.4
1,296,878 + ABZR87_RS21930 0.71 +0.1
1,296,920 + ABZR87_RS21930 0.81 +0.6
1,296,920 + ABZR87_RS21930 0.81 -0.0
1,296,921 - ABZR87_RS21930 0.81 -0.6
1,297,629 + +0.9
1,297,629 + -0.4
1,297,629 + +0.5
1,297,629 + +0.6
1,297,630 - -0.3
1,297,630 - -0.2
1,297,630 - +0.2
1,297,630 - -0.3
1,297,636 + -0.7
1,297,879 - ABZR87_RS21940 0.48 -1.2
1,298,397 + ABZR87_RS21945 0.44 +0.5
1,298,439 + ABZR87_RS21945 0.52 -0.3
1,298,440 - ABZR87_RS21945 0.52 -1.0
1,298,490 + ABZR87_RS21945 0.61 +0.5
1,298,491 - ABZR87_RS21945 0.61 -2.5
1,298,532 + ABZR87_RS21945 0.68 -0.7
1,298,532 + ABZR87_RS21945 0.68 +3.1
1,298,532 + ABZR87_RS21945 0.68 +0.6
1,298,532 + ABZR87_RS21945 0.68 -0.9
1,298,533 - ABZR87_RS21945 0.68 +0.5
1,298,720 + -0.2
1,298,720 + -0.7
1,298,721 - -1.0
1,298,836 + ABZR87_RS21950 0.32 -2.1
1,298,836 + ABZR87_RS21950 0.32 -1.3
1,298,837 - ABZR87_RS21950 0.33 -2.3
1,298,837 - ABZR87_RS21950 0.33 -1.3
1,298,837 - ABZR87_RS21950 0.33 -1.4
1,298,896 + ABZR87_RS21950 0.47 -1.8
1,298,896 + ABZR87_RS21950 0.47 -3.0
1,299,099 - -1.6

Or see this region's nucleotide sequence