Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20325 and ABZR87_RS20330 are separated by 18 nucleotides ABZR87_RS20330 and ABZR87_RS20335 are separated by 100 nucleotides
ABZR87_RS20325: ABZR87_RS20325 - enolase C-terminal domain-like protein, at 948,233 to 949,642
_RS20325
ABZR87_RS20330: ABZR87_RS20330 - MFS transporter, at 949,661 to 951,013
_RS20330
ABZR87_RS20335: ABZR87_RS20335 - aldehyde dehydrogenase (NADP(+)), at 951,114 to 952,685
_RS20335
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 948.801 kb on + strand, within ABZR87_RS20325 at 948.801 kb on + strand, within ABZR87_RS20325 at 948.802 kb on - strand, within ABZR87_RS20325 at 948.978 kb on + strand, within ABZR87_RS20325 at 948.979 kb on - strand, within ABZR87_RS20325 at 949.116 kb on + strand, within ABZR87_RS20325 at 949.116 kb on + strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.117 kb on - strand, within ABZR87_RS20325 at 949.125 kb on + strand, within ABZR87_RS20325 at 949.125 kb on + strand, within ABZR87_RS20325 at 949.384 kb on + strand, within ABZR87_RS20325 at 949.384 kb on + strand, within ABZR87_RS20325 at 949.385 kb on - strand, within ABZR87_RS20325 at 949.385 kb on - strand, within ABZR87_RS20325 at 949.385 kb on - strand, within ABZR87_RS20325 at 949.513 kb on + strand at 949.644 kb on + strand at 949.644 kb on + strand at 949.645 kb on - strand at 949.662 kb on + strand at 949.711 kb on - strand at 949.711 kb on - strand at 949.746 kb on + strand at 949.747 kb on - strand at 949.788 kb on + strand at 949.788 kb on + strand at 949.788 kb on + strand at 949.789 kb on - strand at 949.971 kb on + strand, within ABZR87_RS20330 at 949.972 kb on - strand, within ABZR87_RS20330 at 949.972 kb on - strand, within ABZR87_RS20330 at 949.972 kb on - strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on + strand, within ABZR87_RS20330 at 950.172 kb on - strand, within ABZR87_RS20330 at 950.220 kb on + strand, within ABZR87_RS20330 at 950.220 kb on + strand, within ABZR87_RS20330 at 950.221 kb on - strand, within ABZR87_RS20330 at 950.232 kb on + strand, within ABZR87_RS20330 at 950.233 kb on - strand, within ABZR87_RS20330 at 950.274 kb on + strand, within ABZR87_RS20330 at 950.320 kb on + strand, within ABZR87_RS20330 at 950.320 kb on + strand, within ABZR87_RS20330 at 950.321 kb on - strand, within ABZR87_RS20330 at 950.321 kb on - strand, within ABZR87_RS20330 at 950.349 kb on + strand, within ABZR87_RS20330 at 950.350 kb on - strand, within ABZR87_RS20330 at 950.450 kb on - strand, within ABZR87_RS20330 at 950.450 kb on - strand, within ABZR87_RS20330 at 950.450 kb on - strand, within ABZR87_RS20330 at 950.674 kb on + strand, within ABZR87_RS20330 at 950.736 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.796 kb on + strand, within ABZR87_RS20330 at 950.797 kb on - strand, within ABZR87_RS20330 at 950.823 kb on + strand, within ABZR87_RS20330 at 950.901 kb on + strand at 950.901 kb on + strand at 950.901 kb on + strand at 950.901 kb on + strand at 950.920 kb on + strand at 950.921 kb on - strand at 951.097 kb on - strand at 951.205 kb on + strand at 951.559 kb on + strand, within ABZR87_RS20335 at 951.559 kb on + strand, within ABZR87_RS20335 at 951.560 kb on - strand, within ABZR87_RS20335 at 951.560 kb on - strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.658 kb on + strand, within ABZR87_RS20335 at 951.783 kb on - strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.820 kb on + strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.821 kb on - strand, within ABZR87_RS20335 at 951.901 kb on + strand, within ABZR87_RS20335 at 951.902 kb on - strand, within ABZR87_RS20335 at 951.902 kb on - strand, within ABZR87_RS20335
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 948,801 + ABZR87_RS20325 0.40 -1.7 948,801 + ABZR87_RS20325 0.40 +0.1 948,802 - ABZR87_RS20325 0.40 -0.1 948,978 + ABZR87_RS20325 0.53 +0.7 948,979 - ABZR87_RS20325 0.53 +1.2 949,116 + ABZR87_RS20325 0.63 +0.9 949,116 + ABZR87_RS20325 0.63 +1.6 949,117 - ABZR87_RS20325 0.63 +0.7 949,117 - ABZR87_RS20325 0.63 +0.8 949,117 - ABZR87_RS20325 0.63 +0.4 949,125 + ABZR87_RS20325 0.63 +0.3 949,125 + ABZR87_RS20325 0.63 +1.4 949,384 + ABZR87_RS20325 0.82 -0.6 949,384 + ABZR87_RS20325 0.82 +1.4 949,385 - ABZR87_RS20325 0.82 -0.6 949,385 - ABZR87_RS20325 0.82 +0.4 949,385 - ABZR87_RS20325 0.82 -0.8 949,513 + -0.4 949,644 + -0.1 949,644 + -0.1 949,645 - -0.1 949,662 + +0.6 949,711 - -1.6 949,711 - -1.5 949,746 + +0.5 949,747 - -0.4 949,788 + +1.5 949,788 + +0.5 949,788 + -0.1 949,789 - -0.8 949,971 + ABZR87_RS20330 0.23 +0.1 949,972 - ABZR87_RS20330 0.23 +0.0 949,972 - ABZR87_RS20330 0.23 -0.5 949,972 - ABZR87_RS20330 0.23 -0.4 950,172 + ABZR87_RS20330 0.38 -0.1 950,172 + ABZR87_RS20330 0.38 -0.7 950,172 + ABZR87_RS20330 0.38 -1.7 950,172 + ABZR87_RS20330 0.38 -1.7 950,172 - ABZR87_RS20330 0.38 -0.7 950,220 + ABZR87_RS20330 0.41 -0.2 950,220 + ABZR87_RS20330 0.41 -0.5 950,221 - ABZR87_RS20330 0.41 -0.1 950,232 + ABZR87_RS20330 0.42 +0.6 950,233 - ABZR87_RS20330 0.42 -0.7 950,274 + ABZR87_RS20330 0.45 +0.1 950,320 + ABZR87_RS20330 0.49 +0.5 950,320 + ABZR87_RS20330 0.49 +1.0 950,321 - ABZR87_RS20330 0.49 -0.2 950,321 - ABZR87_RS20330 0.49 -0.4 950,349 + ABZR87_RS20330 0.51 -0.0 950,350 - ABZR87_RS20330 0.51 +0.2 950,450 - ABZR87_RS20330 0.58 -0.1 950,450 - ABZR87_RS20330 0.58 +0.7 950,450 - ABZR87_RS20330 0.58 +0.4 950,674 + ABZR87_RS20330 0.75 -0.3 950,736 + ABZR87_RS20330 0.79 +0.6 950,796 + ABZR87_RS20330 0.84 +1.0 950,796 + ABZR87_RS20330 0.84 +1.1 950,796 + ABZR87_RS20330 0.84 -0.8 950,796 + ABZR87_RS20330 0.84 +0.4 950,797 - ABZR87_RS20330 0.84 -0.6 950,823 + ABZR87_RS20330 0.86 -1.1 950,901 + +0.5 950,901 + +0.5 950,901 + +1.1 950,901 + +0.9 950,920 + +1.2 950,921 - +0.8 951,097 - -0.8 951,205 + -0.2 951,559 + ABZR87_RS20335 0.28 -0.5 951,559 + ABZR87_RS20335 0.28 -0.2 951,560 - ABZR87_RS20335 0.28 -0.2 951,560 - ABZR87_RS20335 0.28 -0.2 951,658 + ABZR87_RS20335 0.35 +1.9 951,658 + ABZR87_RS20335 0.35 +0.9 951,658 + ABZR87_RS20335 0.35 +1.0 951,658 + ABZR87_RS20335 0.35 +0.6 951,783 - ABZR87_RS20335 0.43 -1.2 951,820 + ABZR87_RS20335 0.45 -0.0 951,820 + ABZR87_RS20335 0.45 +0.8 951,820 + ABZR87_RS20335 0.45 -0.5 951,821 - ABZR87_RS20335 0.45 +0.5 951,821 - ABZR87_RS20335 0.45 -1.1 951,821 - ABZR87_RS20335 0.45 -0.3 951,901 + ABZR87_RS20335 0.50 +1.4 951,902 - ABZR87_RS20335 0.50 -1.8 951,902 - ABZR87_RS20335 0.50 -0.4
Or see this region's nucleotide sequence