Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19870 and ABZR87_RS19875 overlap by 4 nucleotides ABZR87_RS19875 and ABZR87_RS19880 are separated by 680 nucleotides
ABZR87_RS19870: ABZR87_RS19870 - GMC family oxidoreductase, at 831,268 to 833,034
_RS19870
ABZR87_RS19875: ABZR87_RS19875 - gluconate 2-dehydrogenase subunit 3 family protein, at 833,031 to 833,900
_RS19875
ABZR87_RS19880: ABZR87_RS19880 - alpha/beta fold hydrolase, at 834,581 to 836,329
_RS19880
Position (kb) 833
834 Strain fitness (log2 ratio) -2
-1
0
1
2 at 832.046 kb on + strand, within ABZR87_RS19870 at 832.046 kb on + strand, within ABZR87_RS19870 at 832.047 kb on - strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.157 kb on + strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.158 kb on - strand, within ABZR87_RS19870 at 832.325 kb on + strand, within ABZR87_RS19870 at 832.325 kb on + strand, within ABZR87_RS19870 at 832.326 kb on - strand, within ABZR87_RS19870 at 832.357 kb on - strand, within ABZR87_RS19870 at 832.365 kb on - strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.397 kb on + strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.398 kb on - strand, within ABZR87_RS19870 at 832.566 kb on - strand, within ABZR87_RS19870 at 832.583 kb on + strand, within ABZR87_RS19870 at 832.584 kb on - strand, within ABZR87_RS19870 at 832.584 kb on - strand, within ABZR87_RS19870 at 832.584 kb on - strand, within ABZR87_RS19870 at 832.601 kb on + strand, within ABZR87_RS19870 at 832.602 kb on - strand, within ABZR87_RS19870 at 832.602 kb on - strand, within ABZR87_RS19870 at 832.655 kb on + strand, within ABZR87_RS19870 at 832.656 kb on - strand, within ABZR87_RS19870 at 832.706 kb on + strand, within ABZR87_RS19870 at 832.862 kb on + strand at 833.073 kb on + strand at 833.073 kb on + strand at 833.074 kb on - strand at 833.081 kb on + strand at 833.081 kb on + strand at 833.082 kb on - strand at 833.082 kb on - strand at 833.082 kb on - strand at 833.185 kb on + strand, within ABZR87_RS19875 at 833.299 kb on + strand, within ABZR87_RS19875 at 833.300 kb on - strand, within ABZR87_RS19875 at 833.300 kb on - strand, within ABZR87_RS19875 at 833.441 kb on - strand, within ABZR87_RS19875 at 833.516 kb on - strand, within ABZR87_RS19875 at 833.558 kb on - strand, within ABZR87_RS19875 at 833.823 kb on + strand at 833.824 kb on - strand at 833.824 kb on - strand at 833.824 kb on - strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.900 kb on + strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 833.901 kb on - strand at 834.073 kb on + strand at 834.074 kb on - strand at 834.074 kb on - strand at 834.074 kb on - strand at 834.248 kb on + strand at 834.248 kb on + strand at 834.249 kb on - strand at 834.249 kb on - strand at 834.375 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.388 kb on + strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.389 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.480 kb on - strand at 834.527 kb on + strand at 834.541 kb on + strand at 834.541 kb on + strand at 834.541 kb on + strand at 834.541 kb on + strand at 834.542 kb on - strand at 834.542 kb on - strand at 834.553 kb on + strand at 834.554 kb on - strand at 834.554 kb on - strand at 834.554 kb on - strand at 834.630 kb on + strand at 834.749 kb on + strand at 834.749 kb on + strand at 834.749 kb on + strand at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.788 kb on + strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.789 kb on - strand, within ABZR87_RS19880 at 834.885 kb on + strand, within ABZR87_RS19880 at 834.885 kb on + strand, within ABZR87_RS19880 at 834.886 kb on - strand, within ABZR87_RS19880 at 834.886 kb on - strand, within ABZR87_RS19880
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 832,046 + ABZR87_RS19870 0.44 +0.4 832,046 + ABZR87_RS19870 0.44 -2.0 832,047 - ABZR87_RS19870 0.44 -0.9 832,157 + ABZR87_RS19870 0.50 -0.1 832,157 + ABZR87_RS19870 0.50 +0.8 832,157 + ABZR87_RS19870 0.50 -1.8 832,157 + ABZR87_RS19870 0.50 -0.9 832,158 - ABZR87_RS19870 0.50 -0.4 832,158 - ABZR87_RS19870 0.50 -0.2 832,158 - ABZR87_RS19870 0.50 +0.4 832,158 - ABZR87_RS19870 0.50 +0.4 832,325 + ABZR87_RS19870 0.60 -1.2 832,325 + ABZR87_RS19870 0.60 -0.5 832,326 - ABZR87_RS19870 0.60 +0.9 832,357 - ABZR87_RS19870 0.62 -0.3 832,365 - ABZR87_RS19870 0.62 -0.4 832,397 + ABZR87_RS19870 0.64 -1.4 832,397 + ABZR87_RS19870 0.64 -0.5 832,397 + ABZR87_RS19870 0.64 +0.8 832,397 + ABZR87_RS19870 0.64 +0.1 832,397 + ABZR87_RS19870 0.64 -0.1 832,397 + ABZR87_RS19870 0.64 +0.5 832,397 + ABZR87_RS19870 0.64 -0.4 832,398 - ABZR87_RS19870 0.64 +1.2 832,398 - ABZR87_RS19870 0.64 -0.1 832,398 - ABZR87_RS19870 0.64 -2.5 832,398 - ABZR87_RS19870 0.64 +0.3 832,398 - ABZR87_RS19870 0.64 -0.7 832,398 - ABZR87_RS19870 0.64 -0.6 832,398 - ABZR87_RS19870 0.64 -0.1 832,566 - ABZR87_RS19870 0.73 +0.5 832,583 + ABZR87_RS19870 0.74 +0.7 832,584 - ABZR87_RS19870 0.74 -0.6 832,584 - ABZR87_RS19870 0.74 -0.1 832,584 - ABZR87_RS19870 0.74 -1.2 832,601 + ABZR87_RS19870 0.75 -1.2 832,602 - ABZR87_RS19870 0.75 +0.6 832,602 - ABZR87_RS19870 0.75 -0.9 832,655 + ABZR87_RS19870 0.78 -1.1 832,656 - ABZR87_RS19870 0.79 +0.3 832,706 + ABZR87_RS19870 0.81 +0.6 832,862 + -2.0 833,073 + -0.4 833,073 + -0.8 833,074 - +0.8 833,081 + +2.0 833,081 + +0.9 833,082 - +0.7 833,082 - +0.7 833,082 - -1.2 833,185 + ABZR87_RS19875 0.18 +0.9 833,299 + ABZR87_RS19875 0.31 +1.5 833,300 - ABZR87_RS19875 0.31 -0.1 833,300 - ABZR87_RS19875 0.31 +0.5 833,441 - ABZR87_RS19875 0.47 -0.7 833,516 - ABZR87_RS19875 0.56 -0.2 833,558 - ABZR87_RS19875 0.61 -0.0 833,823 + +0.1 833,824 - +0.2 833,824 - -0.6 833,824 - -0.2 833,900 + -1.7 833,900 + +0.9 833,900 + -1.3 833,900 + -0.2 833,900 + -1.7 833,901 - +1.7 833,901 - +0.7 833,901 - +0.6 833,901 - +0.2 833,901 - +0.9 834,073 + -0.7 834,074 - +0.1 834,074 - +0.1 834,074 - -1.3 834,248 + +0.2 834,248 + +1.2 834,249 - -0.4 834,249 - +0.4 834,375 + +0.4 834,388 + -1.9 834,388 + -1.5 834,388 + +0.4 834,388 + +0.5 834,388 + +1.2 834,388 + -0.4 834,389 - +0.8 834,389 - -0.4 834,389 - -0.6 834,389 - -1.5 834,389 - +0.1 834,389 - +0.4 834,389 - +0.1 834,479 + +0.5 834,479 + +0.0 834,479 + +0.2 834,480 - +0.4 834,480 - +0.0 834,480 - -0.4 834,480 - +0.2 834,480 - -0.1 834,527 + -0.8 834,541 + -0.1 834,541 + +0.3 834,541 + -1.1 834,541 + -0.2 834,542 - -0.1 834,542 - -1.0 834,553 + -0.5 834,554 - -0.5 834,554 - -2.1 834,554 - -0.2 834,630 + +0.0 834,749 + -0.0 834,749 + +0.6 834,749 + -0.7 834,788 + ABZR87_RS19880 0.12 -0.1 834,788 + ABZR87_RS19880 0.12 +1.1 834,788 + ABZR87_RS19880 0.12 -0.3 834,788 + ABZR87_RS19880 0.12 +0.2 834,788 + ABZR87_RS19880 0.12 -1.0 834,788 + ABZR87_RS19880 0.12 -0.1 834,788 + ABZR87_RS19880 0.12 +0.1 834,789 - ABZR87_RS19880 0.12 -1.2 834,789 - ABZR87_RS19880 0.12 +0.2 834,789 - ABZR87_RS19880 0.12 -0.3 834,789 - ABZR87_RS19880 0.12 -0.1 834,885 + ABZR87_RS19880 0.17 -1.9 834,885 + ABZR87_RS19880 0.17 +0.5 834,886 - ABZR87_RS19880 0.17 +0.7 834,886 - ABZR87_RS19880 0.17 -0.2
Or see this region's nucleotide sequence