Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19580 and ABZR87_RS19585 are separated by 150 nucleotides ABZR87_RS19585 and ABZR87_RS19590 are separated by 170 nucleotides ABZR87_RS19590 and ABZR87_RS19595 are separated by 59 nucleotides
ABZR87_RS19580: ABZR87_RS19580 - DUF2968 domain-containing protein, at 764,993 to 765,784
_RS19580
ABZR87_RS19585: ABZR87_RS19585 - cytochrome P450, at 765,935 to 769,174
_RS19585
ABZR87_RS19590: ABZR87_RS19590 - hypothetical protein, at 769,345 to 769,635
_RS19590
ABZR87_RS19595: ABZR87_RS19595 - Gfo/Idh/MocA family oxidoreductase, at 769,695 to 770,849
_RS19595
Position (kb) 765
766
767
768
769
770 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.950 kb on + strand at 764.951 kb on - strand at 764.951 kb on - strand at 764.951 kb on - strand at 764.951 kb on - strand at 765.083 kb on - strand, within ABZR87_RS19580 at 765.279 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.335 kb on + strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.336 kb on - strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.347 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.386 kb on + strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.387 kb on - strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.389 kb on + strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.390 kb on - strand, within ABZR87_RS19580 at 765.464 kb on + strand, within ABZR87_RS19580 at 765.464 kb on + strand, within ABZR87_RS19580 at 765.465 kb on - strand, within ABZR87_RS19580 at 765.465 kb on - strand, within ABZR87_RS19580 at 765.605 kb on - strand, within ABZR87_RS19580 at 765.843 kb on - strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.897 kb on + strand at 765.898 kb on - strand at 765.898 kb on - strand at 765.898 kb on - strand at 766.000 kb on + strand at 766.001 kb on - strand at 766.001 kb on - strand at 766.001 kb on - strand at 766.097 kb on + strand at 766.136 kb on + strand at 766.136 kb on + strand at 766.137 kb on - strand at 766.322 kb on + strand, within ABZR87_RS19585 at 766.323 kb on - strand, within ABZR87_RS19585 at 766.477 kb on + strand, within ABZR87_RS19585 at 766.820 kb on + strand, within ABZR87_RS19585 at 766.820 kb on + strand, within ABZR87_RS19585 at 766.820 kb on + strand, within ABZR87_RS19585 at 766.821 kb on - strand, within ABZR87_RS19585 at 766.821 kb on - strand, within ABZR87_RS19585 at 766.821 kb on - strand, within ABZR87_RS19585 at 766.821 kb on - strand, within ABZR87_RS19585 at 766.821 kb on - strand, within ABZR87_RS19585 at 766.859 kb on + strand, within ABZR87_RS19585 at 766.859 kb on + strand, within ABZR87_RS19585 at 766.859 kb on + strand, within ABZR87_RS19585 at 766.859 kb on + strand, within ABZR87_RS19585 at 766.860 kb on - strand, within ABZR87_RS19585 at 766.860 kb on - strand, within ABZR87_RS19585 at 766.860 kb on - strand, within ABZR87_RS19585 at 766.860 kb on - strand, within ABZR87_RS19585 at 766.860 kb on - strand, within ABZR87_RS19585 at 766.904 kb on + strand, within ABZR87_RS19585 at 766.904 kb on + strand, within ABZR87_RS19585 at 766.905 kb on - strand, within ABZR87_RS19585 at 766.997 kb on + strand, within ABZR87_RS19585 at 767.052 kb on + strand, within ABZR87_RS19585 at 767.116 kb on - strand, within ABZR87_RS19585 at 767.162 kb on + strand, within ABZR87_RS19585 at 767.162 kb on + strand, within ABZR87_RS19585 at 767.162 kb on + strand, within ABZR87_RS19585 at 767.163 kb on - strand, within ABZR87_RS19585 at 767.163 kb on - strand, within ABZR87_RS19585 at 767.163 kb on - strand, within ABZR87_RS19585 at 767.163 kb on - strand, within ABZR87_RS19585 at 767.273 kb on + strand, within ABZR87_RS19585 at 767.279 kb on + strand, within ABZR87_RS19585 at 767.280 kb on - strand, within ABZR87_RS19585 at 767.456 kb on + strand, within ABZR87_RS19585 at 767.457 kb on - strand, within ABZR87_RS19585 at 767.457 kb on - strand, within ABZR87_RS19585 at 767.457 kb on - strand, within ABZR87_RS19585 at 767.457 kb on - strand, within ABZR87_RS19585 at 767.606 kb on + strand, within ABZR87_RS19585 at 767.607 kb on - strand, within ABZR87_RS19585 at 767.696 kb on + strand, within ABZR87_RS19585 at 767.696 kb on + strand, within ABZR87_RS19585 at 767.697 kb on - strand, within ABZR87_RS19585 at 767.697 kb on - strand, within ABZR87_RS19585 at 767.921 kb on + strand, within ABZR87_RS19585 at 767.921 kb on + strand, within ABZR87_RS19585 at 768.095 kb on + strand, within ABZR87_RS19585 at 768.095 kb on + strand, within ABZR87_RS19585 at 768.096 kb on - strand, within ABZR87_RS19585 at 768.096 kb on - strand, within ABZR87_RS19585 at 768.122 kb on + strand, within ABZR87_RS19585 at 768.307 kb on + strand, within ABZR87_RS19585 at 768.515 kb on + strand, within ABZR87_RS19585 at 768.515 kb on + strand, within ABZR87_RS19585 at 768.515 kb on + strand, within ABZR87_RS19585 at 768.515 kb on + strand, within ABZR87_RS19585 at 768.516 kb on - strand, within ABZR87_RS19585 at 768.516 kb on - strand, within ABZR87_RS19585 at 768.609 kb on - strand, within ABZR87_RS19585 at 768.629 kb on + strand, within ABZR87_RS19585 at 768.630 kb on - strand, within ABZR87_RS19585 at 768.630 kb on - strand, within ABZR87_RS19585 at 768.864 kb on - strand at 768.921 kb on - strand at 768.986 kb on - strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.019 kb on + strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.020 kb on - strand at 769.408 kb on + strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.409 kb on - strand, within ABZR87_RS19590 at 769.420 kb on + strand, within ABZR87_RS19590 at 769.420 kb on + strand, within ABZR87_RS19590 at 769.423 kb on - strand, within ABZR87_RS19590 at 769.633 kb on + strand at 769.633 kb on + strand at 769.633 kb on + strand at 769.696 kb on + strand at 769.697 kb on - strand at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.921 kb on + strand, within ABZR87_RS19595 at 769.922 kb on - strand, within ABZR87_RS19595 at 769.922 kb on - strand, within ABZR87_RS19595 at 769.996 kb on + strand, within ABZR87_RS19595 at 769.997 kb on - strand, within ABZR87_RS19595 at 770.090 kb on - strand, within ABZR87_RS19595
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 764,948 + -0.1 764,949 - +0.6 764,949 - +0.4 764,949 - -0.2 764,950 + +1.4 764,951 - -0.6 764,951 - -0.4 764,951 - +0.3 764,951 - +1.5 765,083 - ABZR87_RS19580 0.11 -2.4 765,279 + ABZR87_RS19580 0.36 -0.1 765,335 + ABZR87_RS19580 0.43 -1.6 765,335 + ABZR87_RS19580 0.43 -0.3 765,335 + ABZR87_RS19580 0.43 +1.1 765,335 + ABZR87_RS19580 0.43 -0.2 765,335 + ABZR87_RS19580 0.43 +0.4 765,336 - ABZR87_RS19580 0.43 +0.3 765,336 - ABZR87_RS19580 0.43 +0.5 765,336 - ABZR87_RS19580 0.43 -0.7 765,336 - ABZR87_RS19580 0.43 +0.1 765,336 - ABZR87_RS19580 0.43 +0.6 765,336 - ABZR87_RS19580 0.43 +0.4 765,336 - ABZR87_RS19580 0.43 -0.3 765,347 + ABZR87_RS19580 0.45 +0.7 765,347 + ABZR87_RS19580 0.45 +1.1 765,347 + ABZR87_RS19580 0.45 +0.2 765,386 + ABZR87_RS19580 0.50 +0.2 765,386 + ABZR87_RS19580 0.50 -0.5 765,386 + ABZR87_RS19580 0.50 +1.0 765,386 + ABZR87_RS19580 0.50 +1.6 765,387 - ABZR87_RS19580 0.50 +0.9 765,387 - ABZR87_RS19580 0.50 +1.6 765,387 - ABZR87_RS19580 0.50 -0.1 765,387 - ABZR87_RS19580 0.50 +0.4 765,387 - ABZR87_RS19580 0.50 +0.4 765,387 - ABZR87_RS19580 0.50 -0.8 765,387 - ABZR87_RS19580 0.50 +1.0 765,389 + ABZR87_RS19580 0.50 -0.2 765,389 + ABZR87_RS19580 0.50 +0.6 765,389 + ABZR87_RS19580 0.50 +0.9 765,389 + ABZR87_RS19580 0.50 +0.6 765,389 + ABZR87_RS19580 0.50 -0.4 765,389 + ABZR87_RS19580 0.50 -0.3 765,389 + ABZR87_RS19580 0.50 -0.7 765,389 + ABZR87_RS19580 0.50 +1.0 765,390 - ABZR87_RS19580 0.50 +0.3 765,390 - ABZR87_RS19580 0.50 -0.2 765,390 - ABZR87_RS19580 0.50 +0.8 765,390 - ABZR87_RS19580 0.50 +0.2 765,464 + ABZR87_RS19580 0.59 +0.6 765,464 + ABZR87_RS19580 0.59 -0.7 765,465 - ABZR87_RS19580 0.60 +0.7 765,465 - ABZR87_RS19580 0.60 +0.1 765,605 - ABZR87_RS19580 0.77 -0.7 765,843 - -1.8 765,897 + +2.0 765,897 + -0.7 765,897 + -0.8 765,897 + -0.7 765,897 + -0.3 765,897 + -0.1 765,898 - +0.3 765,898 - -1.6 765,898 - -0.9 766,000 + -0.1 766,001 - +0.6 766,001 - +0.8 766,001 - -1.0 766,097 + +0.9 766,136 + -1.0 766,136 + -0.6 766,137 - -0.3 766,322 + ABZR87_RS19585 0.12 -0.7 766,323 - ABZR87_RS19585 0.12 -0.9 766,477 + ABZR87_RS19585 0.17 +0.6 766,820 + ABZR87_RS19585 0.27 -0.3 766,820 + ABZR87_RS19585 0.27 +0.9 766,820 + ABZR87_RS19585 0.27 +0.2 766,821 - ABZR87_RS19585 0.27 -0.3 766,821 - ABZR87_RS19585 0.27 -1.9 766,821 - ABZR87_RS19585 0.27 -0.3 766,821 - ABZR87_RS19585 0.27 -0.1 766,821 - ABZR87_RS19585 0.27 +0.0 766,859 + ABZR87_RS19585 0.29 -0.3 766,859 + ABZR87_RS19585 0.29 -0.4 766,859 + ABZR87_RS19585 0.29 -0.1 766,859 + ABZR87_RS19585 0.29 +0.1 766,860 - ABZR87_RS19585 0.29 -1.1 766,860 - ABZR87_RS19585 0.29 -0.2 766,860 - ABZR87_RS19585 0.29 -0.9 766,860 - ABZR87_RS19585 0.29 +0.4 766,860 - ABZR87_RS19585 0.29 +0.7 766,904 + ABZR87_RS19585 0.30 +0.1 766,904 + ABZR87_RS19585 0.30 -0.1 766,905 - ABZR87_RS19585 0.30 +1.0 766,997 + ABZR87_RS19585 0.33 +1.1 767,052 + ABZR87_RS19585 0.34 +0.5 767,116 - ABZR87_RS19585 0.36 -0.3 767,162 + ABZR87_RS19585 0.38 -0.6 767,162 + ABZR87_RS19585 0.38 +0.3 767,162 + ABZR87_RS19585 0.38 +1.4 767,163 - ABZR87_RS19585 0.38 +0.1 767,163 - ABZR87_RS19585 0.38 -0.5 767,163 - ABZR87_RS19585 0.38 -0.0 767,163 - ABZR87_RS19585 0.38 +1.0 767,273 + ABZR87_RS19585 0.41 -1.0 767,279 + ABZR87_RS19585 0.41 +0.4 767,280 - ABZR87_RS19585 0.42 -2.2 767,456 + ABZR87_RS19585 0.47 -1.2 767,457 - ABZR87_RS19585 0.47 -1.5 767,457 - ABZR87_RS19585 0.47 -0.9 767,457 - ABZR87_RS19585 0.47 -0.4 767,457 - ABZR87_RS19585 0.47 -0.4 767,606 + ABZR87_RS19585 0.52 -1.5 767,607 - ABZR87_RS19585 0.52 -1.1 767,696 + ABZR87_RS19585 0.54 -0.2 767,696 + ABZR87_RS19585 0.54 -0.2 767,697 - ABZR87_RS19585 0.54 +0.1 767,697 - ABZR87_RS19585 0.54 +0.6 767,921 + ABZR87_RS19585 0.61 -0.5 767,921 + ABZR87_RS19585 0.61 +1.4 768,095 + ABZR87_RS19585 0.67 -0.9 768,095 + ABZR87_RS19585 0.67 -0.4 768,096 - ABZR87_RS19585 0.67 -0.4 768,096 - ABZR87_RS19585 0.67 -0.3 768,122 + ABZR87_RS19585 0.68 +0.3 768,307 + ABZR87_RS19585 0.73 +2.4 768,515 + ABZR87_RS19585 0.80 -0.5 768,515 + ABZR87_RS19585 0.80 +0.1 768,515 + ABZR87_RS19585 0.80 -0.5 768,515 + ABZR87_RS19585 0.80 +0.2 768,516 - ABZR87_RS19585 0.80 -0.0 768,516 - ABZR87_RS19585 0.80 -0.3 768,609 - ABZR87_RS19585 0.83 +2.6 768,629 + ABZR87_RS19585 0.83 -0.2 768,630 - ABZR87_RS19585 0.83 -0.4 768,630 - ABZR87_RS19585 0.83 -0.2 768,864 - +0.2 768,921 - +1.3 768,986 - +0.1 769,019 + +0.3 769,019 + +1.3 769,019 + +1.1 769,019 + -0.7 769,019 + +1.5 769,019 + +0.2 769,019 + -0.4 769,019 + -0.3 769,019 + -1.0 769,019 + -0.2 769,019 + +0.6 769,019 + -1.1 769,019 + +1.6 769,020 - -0.2 769,020 - +0.1 769,020 - -0.7 769,020 - +1.7 769,020 - -0.1 769,020 - +0.1 769,020 - -0.2 769,020 - -0.6 769,020 - +1.1 769,020 - +0.2 769,020 - +0.2 769,408 + ABZR87_RS19590 0.22 +0.1 769,409 - ABZR87_RS19590 0.22 -0.9 769,409 - ABZR87_RS19590 0.22 +1.5 769,409 - ABZR87_RS19590 0.22 +0.9 769,420 + ABZR87_RS19590 0.26 +1.0 769,420 + ABZR87_RS19590 0.26 +0.2 769,423 - ABZR87_RS19590 0.27 -0.0 769,633 + -3.1 769,633 + -2.1 769,633 + -1.4 769,696 + +0.5 769,697 - -1.2 769,921 + ABZR87_RS19595 0.20 -0.2 769,921 + ABZR87_RS19595 0.20 -0.0 769,921 + ABZR87_RS19595 0.20 +1.2 769,921 + ABZR87_RS19595 0.20 +0.5 769,921 + ABZR87_RS19595 0.20 +0.8 769,921 + ABZR87_RS19595 0.20 +0.4 769,921 + ABZR87_RS19595 0.20 +0.2 769,922 - ABZR87_RS19595 0.20 +1.4 769,922 - ABZR87_RS19595 0.20 +0.9 769,996 + ABZR87_RS19595 0.26 +0.8 769,997 - ABZR87_RS19595 0.26 -0.2 770,090 - ABZR87_RS19595 0.34 -0.2
Or see this region's nucleotide sequence