Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS19320 and ABZR87_RS19325 are separated by 4 nucleotides ABZR87_RS19325 and ABZR87_RS19330 overlap by 4 nucleotides ABZR87_RS19330 and ABZR87_RS19335 are separated by 84 nucleotides
ABZR87_RS19320: ABZR87_RS19320 - hypothetical protein, at 694,480 to 694,974
_RS19320
ABZR87_RS19325: ABZR87_RS19325 - type III secretion system export apparatus subunit SctT, at 694,979 to 695,779
_RS19325
ABZR87_RS19330: ABZR87_RS19330 - EscU/YscU/HrcU family type III secretion system export apparatus switch protein, at 695,776 to 696,843
_RS19330
ABZR87_RS19335: ABZR87_RS19335 - glutamate cyclase domain-containing protein, at 696,928 to 704,658
_RS19335
Position (kb) 695
696
697 Strain fitness (log2 ratio) -2
-1
0
1
2 at 695.062 kb on + strand, within ABZR87_RS19325 at 695.063 kb on - strand, within ABZR87_RS19325 at 695.441 kb on + strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.442 kb on - strand, within ABZR87_RS19325 at 695.945 kb on + strand, within ABZR87_RS19330 at 695.945 kb on + strand, within ABZR87_RS19330 at 696.008 kb on + strand, within ABZR87_RS19330 at 696.040 kb on - strand, within ABZR87_RS19330 at 696.361 kb on + strand, within ABZR87_RS19330 at 696.361 kb on + strand, within ABZR87_RS19330 at 696.362 kb on - strand, within ABZR87_RS19330 at 696.386 kb on - strand, within ABZR87_RS19330 at 696.386 kb on - strand, within ABZR87_RS19330 at 696.517 kb on + strand, within ABZR87_RS19330 at 696.517 kb on + strand, within ABZR87_RS19330 at 696.518 kb on - strand, within ABZR87_RS19330 at 696.589 kb on + strand, within ABZR87_RS19330 at 696.590 kb on - strand, within ABZR87_RS19330 at 696.590 kb on - strand, within ABZR87_RS19330 at 696.742 kb on - strand at 696.824 kb on - strand at 697.053 kb on + strand at 697.163 kb on + strand at 697.519 kb on + strand at 697.536 kb on + strand at 697.536 kb on + strand at 697.536 kb on + strand at 697.536 kb on + strand at 697.537 kb on - strand at 697.581 kb on + strand at 697.581 kb on + strand at 697.581 kb on + strand at 697.582 kb on - strand at 697.582 kb on - strand at 697.582 kb on - strand at 697.583 kb on + strand at 697.584 kb on - strand at 697.584 kb on - strand at 697.584 kb on - strand at 697.585 kb on + strand at 697.585 kb on + strand at 697.585 kb on + strand at 697.585 kb on + strand at 697.586 kb on - strand at 697.804 kb on + strand, within ABZR87_RS19335
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 695,062 + ABZR87_RS19325 0.10 -0.3 695,063 - ABZR87_RS19325 0.10 +0.4 695,441 + ABZR87_RS19325 0.58 +0.6 695,442 - ABZR87_RS19325 0.58 +0.5 695,442 - ABZR87_RS19325 0.58 +0.9 695,442 - ABZR87_RS19325 0.58 +0.6 695,945 + ABZR87_RS19330 0.16 -1.3 695,945 + ABZR87_RS19330 0.16 -0.3 696,008 + ABZR87_RS19330 0.22 +0.2 696,040 - ABZR87_RS19330 0.25 -0.6 696,361 + ABZR87_RS19330 0.55 +1.8 696,361 + ABZR87_RS19330 0.55 -0.9 696,362 - ABZR87_RS19330 0.55 -0.9 696,386 - ABZR87_RS19330 0.57 +0.0 696,386 - ABZR87_RS19330 0.57 -1.1 696,517 + ABZR87_RS19330 0.69 +0.5 696,517 + ABZR87_RS19330 0.69 -0.1 696,518 - ABZR87_RS19330 0.69 -1.4 696,589 + ABZR87_RS19330 0.76 +0.1 696,590 - ABZR87_RS19330 0.76 +0.9 696,590 - ABZR87_RS19330 0.76 +2.5 696,742 - +0.7 696,824 - -1.5 697,053 + -0.2 697,163 + -1.6 697,519 + +0.6 697,536 + +0.6 697,536 + +0.3 697,536 + +0.4 697,536 + -1.9 697,537 - +0.0 697,581 + -1.1 697,581 + +1.3 697,581 + -1.6 697,582 - -0.6 697,582 - +0.4 697,582 - +0.1 697,583 + +1.1 697,584 - +0.2 697,584 - +1.6 697,584 - -1.3 697,585 + +0.4 697,585 + -0.2 697,585 + -0.5 697,585 + +0.5 697,586 - -0.4 697,804 + ABZR87_RS19335 0.11 -0.7
Or see this region's nucleotide sequence