Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18840

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18835 and ABZR87_RS18840 overlap by 4 nucleotidesABZR87_RS18840 and ABZR87_RS18845 are separated by 15 nucleotides ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453 _RS18835 ABZR87_RS18840: ABZR87_RS18840 - cytochrome ubiquinol oxidase subunit I, at 579,450 to 580,838 _RS18840 ABZR87_RS18845: ABZR87_RS18845 - GbsR/MarR family transcriptional regulator, at 580,854 to 581,414 _RS18845 Position (kb) 579 580 581Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 578.465 kb on + strandat 578.466 kb on - strandat 578.466 kb on - strandat 578.471 kb on + strandat 578.471 kb on + strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.481 kb on - strandat 578.600 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.022 kb on + strand, within ABZR87_RS18835at 579.023 kb on - strand, within ABZR87_RS18835at 579.023 kb on - strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.071 kb on + strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.072 kb on - strand, within ABZR87_RS18835at 579.179 kb on + strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.180 kb on - strand, within ABZR87_RS18835at 579.350 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.368 kb on + strandat 579.369 kb on - strandat 579.565 kb on + strandat 579.565 kb on + strandat 579.565 kb on + strandat 579.566 kb on - strandat 579.566 kb on - strandat 579.583 kb on + strandat 579.583 kb on + strandat 579.604 kb on + strand, within ABZR87_RS18840at 579.604 kb on + strand, within ABZR87_RS18840at 579.604 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.612 kb on + strand, within ABZR87_RS18840at 579.613 kb on - strand, within ABZR87_RS18840at 579.616 kb on + strand, within ABZR87_RS18840at 579.617 kb on - strand, within ABZR87_RS18840at 579.688 kb on + strand, within ABZR87_RS18840at 579.689 kb on - strand, within ABZR87_RS18840at 579.689 kb on - strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.724 kb on + strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.725 kb on - strand, within ABZR87_RS18840at 579.961 kb on + strand, within ABZR87_RS18840at 579.961 kb on + strand, within ABZR87_RS18840at 580.229 kb on - strand, within ABZR87_RS18840at 580.367 kb on - strand, within ABZR87_RS18840at 580.457 kb on + strand, within ABZR87_RS18840at 580.458 kb on - strand, within ABZR87_RS18840at 580.544 kb on - strand, within ABZR87_RS18840at 580.565 kb on + strand, within ABZR87_RS18840at 580.566 kb on - strand, within ABZR87_RS18840at 580.566 kb on - strand, within ABZR87_RS18840at 580.583 kb on + strand, within ABZR87_RS18840at 580.583 kb on + strand, within ABZR87_RS18840at 580.583 kb on + strand, within ABZR87_RS18840at 580.584 kb on - strand, within ABZR87_RS18840at 580.585 kb on + strand, within ABZR87_RS18840at 580.586 kb on - strand, within ABZR87_RS18840at 580.586 kb on - strand, within ABZR87_RS18840at 580.681 kb on + strand, within ABZR87_RS18840at 580.682 kb on - strand, within ABZR87_RS18840at 580.790 kb on + strandat 580.791 kb on - strandat 580.791 kb on - strandat 580.855 kb on + strandat 580.855 kb on + strandat 580.856 kb on - strandat 580.856 kb on - strandat 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.910 kb on + strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 580.911 kb on - strand, within ABZR87_RS18845at 581.008 kb on + strand, within ABZR87_RS18845at 581.008 kb on + strand, within ABZR87_RS18845at 581.008 kb on + strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.009 kb on - strand, within ABZR87_RS18845at 581.323 kb on + strand, within ABZR87_RS18845at 581.324 kb on - strand, within ABZR87_RS18845at 581.456 kb on - strandat 581.533 kb on + strandat 581.533 kb on + strandat 581.534 kb on - strandat 581.534 kb on - strandat 581.534 kb on - strandat 581.575 kb on + strandat 581.685 kb on - strandat 581.685 kb on - strandat 581.691 kb on + strandat 581.691 kb on + strandat 581.691 kb on + strandat 581.692 kb on - strandat 581.789 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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578,465 + -0.4
578,466 - +0.1
578,466 - +1.1
578,471 + +0.3
578,471 + +0.8
578,472 - -0.4
578,472 - -0.3
578,472 - -0.4
578,481 - +1.0
578,600 + ABZR87_RS18835 0.17 +0.9
579,020 + ABZR87_RS18835 0.58 -2.0
579,020 + ABZR87_RS18835 0.58 +0.7
579,020 + ABZR87_RS18835 0.58 -0.4
579,020 + ABZR87_RS18835 0.58 +1.0
579,020 + ABZR87_RS18835 0.58 -0.1
579,020 + ABZR87_RS18835 0.58 +1.0
579,020 + ABZR87_RS18835 0.58 -0.1
579,020 + ABZR87_RS18835 0.58 +0.6
579,020 + ABZR87_RS18835 0.58 +0.1
579,021 - ABZR87_RS18835 0.58 +0.1
579,021 - ABZR87_RS18835 0.58 -0.2
579,021 - ABZR87_RS18835 0.58 +2.1
579,021 - ABZR87_RS18835 0.58 -1.8
579,021 - ABZR87_RS18835 0.58 -0.3
579,021 - ABZR87_RS18835 0.58 -0.1
579,021 - ABZR87_RS18835 0.58 +0.6
579,021 - ABZR87_RS18835 0.58 -1.8
579,021 - ABZR87_RS18835 0.58 +0.4
579,022 + ABZR87_RS18835 0.58 +0.5
579,023 - ABZR87_RS18835 0.58 -0.2
579,023 - ABZR87_RS18835 0.58 -1.2
579,071 + ABZR87_RS18835 0.63 +0.1
579,071 + ABZR87_RS18835 0.63 -0.6
579,071 + ABZR87_RS18835 0.63 +1.0
579,072 - ABZR87_RS18835 0.63 -0.1
579,072 - ABZR87_RS18835 0.63 +0.1
579,072 - ABZR87_RS18835 0.63 -0.7
579,072 - ABZR87_RS18835 0.63 -0.7
579,072 - ABZR87_RS18835 0.63 +0.2
579,179 + ABZR87_RS18835 0.73 +2.2
579,180 - ABZR87_RS18835 0.73 +0.1
579,180 - ABZR87_RS18835 0.73 +0.5
579,180 - ABZR87_RS18835 0.73 -0.2
579,350 + +0.6
579,368 + +0.3
579,368 + +0.0
579,368 + -1.2
579,368 + +0.5
579,368 + -1.6
579,369 - -0.2
579,565 + -0.2
579,565 + +3.1
579,565 + +0.7
579,566 - +0.2
579,566 - -0.6
579,583 + +1.6
579,583 + -1.7
579,604 + ABZR87_RS18840 0.11 -0.3
579,604 + ABZR87_RS18840 0.11 -1.1
579,604 + ABZR87_RS18840 0.11 -0.3
579,612 + ABZR87_RS18840 0.12 -1.0
579,612 + ABZR87_RS18840 0.12 -0.7
579,612 + ABZR87_RS18840 0.12 +0.2
579,612 + ABZR87_RS18840 0.12 -0.9
579,613 - ABZR87_RS18840 0.12 +0.3
579,616 + ABZR87_RS18840 0.12 +0.7
579,617 - ABZR87_RS18840 0.12 +1.1
579,688 + ABZR87_RS18840 0.17 +1.0
579,689 - ABZR87_RS18840 0.17 +0.3
579,689 - ABZR87_RS18840 0.17 +1.6
579,724 + ABZR87_RS18840 0.20 -0.2
579,724 + ABZR87_RS18840 0.20 -0.6
579,724 + ABZR87_RS18840 0.20 -0.1
579,724 + ABZR87_RS18840 0.20 -0.9
579,724 + ABZR87_RS18840 0.20 +0.2
579,725 - ABZR87_RS18840 0.20 +0.2
579,725 - ABZR87_RS18840 0.20 +0.9
579,725 - ABZR87_RS18840 0.20 +0.2
579,725 - ABZR87_RS18840 0.20 +0.8
579,961 + ABZR87_RS18840 0.37 +1.0
579,961 + ABZR87_RS18840 0.37 -0.1
580,229 - ABZR87_RS18840 0.56 -0.1
580,367 - ABZR87_RS18840 0.66 -0.5
580,457 + ABZR87_RS18840 0.72 +0.5
580,458 - ABZR87_RS18840 0.73 -0.3
580,544 - ABZR87_RS18840 0.79 +0.8
580,565 + ABZR87_RS18840 0.80 -0.6
580,566 - ABZR87_RS18840 0.80 -0.3
580,566 - ABZR87_RS18840 0.80 -1.8
580,583 + ABZR87_RS18840 0.82 -0.5
580,583 + ABZR87_RS18840 0.82 -0.9
580,583 + ABZR87_RS18840 0.82 +0.1
580,584 - ABZR87_RS18840 0.82 +2.3
580,585 + ABZR87_RS18840 0.82 -0.6
580,586 - ABZR87_RS18840 0.82 +0.6
580,586 - ABZR87_RS18840 0.82 -0.1
580,681 + ABZR87_RS18840 0.89 -1.7
580,682 - ABZR87_RS18840 0.89 -1.7
580,790 + -0.9
580,791 - -1.1
580,791 - +0.1
580,855 + -1.2
580,855 + -1.3
580,856 - +0.2
580,856 - -0.6
580,910 + ABZR87_RS18845 0.10 -2.6
580,910 + ABZR87_RS18845 0.10 -0.1
580,910 + ABZR87_RS18845 0.10 -1.6
580,910 + ABZR87_RS18845 0.10 -1.5
580,910 + ABZR87_RS18845 0.10 +0.1
580,910 + ABZR87_RS18845 0.10 -0.5
580,910 + ABZR87_RS18845 0.10 -0.1
580,911 - ABZR87_RS18845 0.10 -0.2
580,911 - ABZR87_RS18845 0.10 +0.0
580,911 - ABZR87_RS18845 0.10 +0.2
580,911 - ABZR87_RS18845 0.10 +0.0
580,911 - ABZR87_RS18845 0.10 -0.3
581,008 + ABZR87_RS18845 0.27 -1.4
581,008 + ABZR87_RS18845 0.27 -2.3
581,008 + ABZR87_RS18845 0.27 -1.7
581,009 - ABZR87_RS18845 0.28 +0.3
581,009 - ABZR87_RS18845 0.28 +2.1
581,009 - ABZR87_RS18845 0.28 -0.2
581,009 - ABZR87_RS18845 0.28 +0.6
581,009 - ABZR87_RS18845 0.28 -0.1
581,323 + ABZR87_RS18845 0.84 -0.7
581,324 - ABZR87_RS18845 0.84 +1.4
581,456 - +0.2
581,533 + -1.0
581,533 + -2.5
581,534 - +0.7
581,534 - +0.8
581,534 - +1.3
581,575 + -1.6
581,685 - +1.3
581,685 - +2.3
581,691 + -0.2
581,691 + -3.0
581,691 + -1.8
581,692 - +2.1
581,789 - +1.0

Or see this region's nucleotide sequence