Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18215

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18210 and ABZR87_RS18215 overlap by 4 nucleotidesABZR87_RS18215 and ABZR87_RS18220 are separated by 270 nucleotides ABZR87_RS18210: ABZR87_RS18210 - aldose epimerase family protein, at 455,564 to 456,646 _RS18210 ABZR87_RS18215: ABZR87_RS18215 - DNA-binding transcriptional regulator, at 456,643 to 457,866 _RS18215 ABZR87_RS18220: ABZR87_RS18220 - D-xylose ABC transporter substrate-binding protein, at 458,137 to 459,165 _RS18220 Position (kb) 456 457 458Strain fitness (log2 ratio) -3 -2 -1 0 1at 455.690 kb on + strand, within ABZR87_RS18210at 455.690 kb on + strand, within ABZR87_RS18210at 455.691 kb on - strand, within ABZR87_RS18210at 455.691 kb on - strand, within ABZR87_RS18210at 455.737 kb on - strand, within ABZR87_RS18210at 455.796 kb on + strand, within ABZR87_RS18210at 455.843 kb on - strand, within ABZR87_RS18210at 456.124 kb on - strand, within ABZR87_RS18210at 456.124 kb on - strand, within ABZR87_RS18210at 456.257 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.324 kb on + strand, within ABZR87_RS18210at 456.325 kb on - strand, within ABZR87_RS18210at 456.344 kb on - strand, within ABZR87_RS18210at 456.415 kb on - strand, within ABZR87_RS18210at 456.712 kb on + strandat 456.725 kb on + strandat 456.725 kb on + strandat 456.726 kb on - strandat 456.726 kb on - strandat 456.726 kb on - strandat 456.726 kb on - strandat 456.738 kb on + strandat 456.738 kb on + strandat 456.739 kb on - strandat 456.739 kb on - strandat 456.889 kb on - strand, within ABZR87_RS18215at 456.968 kb on + strand, within ABZR87_RS18215at 456.968 kb on + strand, within ABZR87_RS18215at 456.969 kb on - strand, within ABZR87_RS18215at 456.969 kb on - strand, within ABZR87_RS18215at 456.969 kb on - strand, within ABZR87_RS18215at 457.356 kb on - strand, within ABZR87_RS18215at 457.408 kb on - strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.544 kb on + strand, within ABZR87_RS18215at 457.545 kb on - strand, within ABZR87_RS18215at 457.545 kb on - strand, within ABZR87_RS18215at 457.562 kb on + strand, within ABZR87_RS18215at 457.563 kb on - strand, within ABZR87_RS18215at 457.580 kb on + strand, within ABZR87_RS18215at 457.581 kb on - strand, within ABZR87_RS18215at 457.581 kb on - strand, within ABZR87_RS18215at 457.754 kb on + strandat 457.755 kb on - strandat 457.787 kb on + strandat 457.788 kb on - strandat 457.788 kb on - strandat 457.903 kb on + strandat 457.945 kb on - strandat 457.998 kb on - strandat 458.019 kb on - strandat 458.079 kb on - strandat 458.303 kb on - strand, within ABZR87_RS18220at 458.501 kb on - strand, within ABZR87_RS18220at 458.501 kb on - strand, within ABZR87_RS18220at 458.536 kb on + strand, within ABZR87_RS18220at 458.536 kb on + strand, within ABZR87_RS18220at 458.536 kb on + strand, within ABZR87_RS18220at 458.587 kb on + strand, within ABZR87_RS18220at 458.587 kb on + strand, within ABZR87_RS18220at 458.588 kb on - strand, within ABZR87_RS18220at 458.612 kb on - strand, within ABZR87_RS18220at 458.612 kb on - strand, within ABZR87_RS18220

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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455,690 + ABZR87_RS18210 0.12 -0.8
455,690 + ABZR87_RS18210 0.12 -0.0
455,691 - ABZR87_RS18210 0.12 +1.0
455,691 - ABZR87_RS18210 0.12 -0.0
455,737 - ABZR87_RS18210 0.16 +0.1
455,796 + ABZR87_RS18210 0.21 +0.5
455,843 - ABZR87_RS18210 0.26 -0.6
456,124 - ABZR87_RS18210 0.52 -0.7
456,124 - ABZR87_RS18210 0.52 +0.2
456,257 + ABZR87_RS18210 0.64 +0.1
456,324 + ABZR87_RS18210 0.70 -0.2
456,324 + ABZR87_RS18210 0.70 -1.4
456,324 + ABZR87_RS18210 0.70 +1.0
456,325 - ABZR87_RS18210 0.70 +0.3
456,344 - ABZR87_RS18210 0.72 +0.1
456,415 - ABZR87_RS18210 0.79 +0.4
456,712 + +0.9
456,725 + -0.9
456,725 + +0.6
456,726 - -2.9
456,726 - -0.7
456,726 - -0.1
456,726 - -0.3
456,738 + -0.6
456,738 + -1.2
456,739 - -0.0
456,739 - +0.6
456,889 - ABZR87_RS18215 0.20 +0.6
456,968 + ABZR87_RS18215 0.27 +0.9
456,968 + ABZR87_RS18215 0.27 +0.3
456,969 - ABZR87_RS18215 0.27 -0.2
456,969 - ABZR87_RS18215 0.27 +0.4
456,969 - ABZR87_RS18215 0.27 -1.5
457,356 - ABZR87_RS18215 0.58 +0.6
457,408 - ABZR87_RS18215 0.62 -1.7
457,544 + ABZR87_RS18215 0.74 +0.3
457,544 + ABZR87_RS18215 0.74 +0.9
457,544 + ABZR87_RS18215 0.74 +1.5
457,544 + ABZR87_RS18215 0.74 +1.0
457,544 + ABZR87_RS18215 0.74 +0.9
457,545 - ABZR87_RS18215 0.74 +0.3
457,545 - ABZR87_RS18215 0.74 -1.7
457,562 + ABZR87_RS18215 0.75 -1.3
457,563 - ABZR87_RS18215 0.75 -0.1
457,580 + ABZR87_RS18215 0.77 +0.2
457,581 - ABZR87_RS18215 0.77 +0.2
457,581 - ABZR87_RS18215 0.77 -0.4
457,754 + -0.9
457,755 - -0.1
457,787 + +1.1
457,788 - -0.2
457,788 - +1.6
457,903 + -0.7
457,945 - +1.0
457,998 - +0.1
458,019 - -1.0
458,079 - +0.5
458,303 - ABZR87_RS18220 0.16 +0.3
458,501 - ABZR87_RS18220 0.35 +0.1
458,501 - ABZR87_RS18220 0.35 -2.2
458,536 + ABZR87_RS18220 0.39 -1.0
458,536 + ABZR87_RS18220 0.39 +0.9
458,536 + ABZR87_RS18220 0.39 -0.7
458,587 + ABZR87_RS18220 0.44 +1.0
458,587 + ABZR87_RS18220 0.44 -1.6
458,588 - ABZR87_RS18220 0.44 -0.1
458,612 - ABZR87_RS18220 0.46 -0.5
458,612 - ABZR87_RS18220 0.46 -0.1

Or see this region's nucleotide sequence