Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17725

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17720 and ABZR87_RS17725 overlap by 11 nucleotidesABZR87_RS17725 and ABZR87_RS17730 are separated by 51 nucleotides ABZR87_RS17720: ABZR87_RS17720 - ABC transporter permease, at 338,346 to 339,242 _RS17720 ABZR87_RS17725: ABZR87_RS17725 - ABC transporter ATP-binding protein, at 339,232 to 340,026 _RS17725 ABZR87_RS17730: ABZR87_RS17730 - GntR family transcriptional regulator, at 340,078 to 340,800 _RS17730 Position (kb) 339 340 341Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 338.272 kb on - strandat 338.272 kb on - strandat 338.308 kb on + strandat 338.308 kb on + strandat 338.309 kb on - strandat 338.347 kb on + strandat 338.348 kb on - strandat 338.348 kb on - strandat 338.348 kb on - strandat 338.397 kb on + strandat 338.400 kb on + strandat 338.400 kb on + strandat 338.401 kb on - strandat 338.401 kb on - strandat 338.485 kb on + strand, within ABZR87_RS17720at 338.485 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.492 kb on - strand, within ABZR87_RS17720at 338.633 kb on - strand, within ABZR87_RS17720at 338.633 kb on - strand, within ABZR87_RS17720at 338.633 kb on - strand, within ABZR87_RS17720at 338.654 kb on - strand, within ABZR87_RS17720at 338.917 kb on + strand, within ABZR87_RS17720at 339.112 kb on + strand, within ABZR87_RS17720at 339.182 kb on - strandat 339.182 kb on - strandat 339.182 kb on - strandat 339.457 kb on + strand, within ABZR87_RS17725at 339.644 kb on + strand, within ABZR87_RS17725at 339.645 kb on - strand, within ABZR87_RS17725at 339.645 kb on - strand, within ABZR87_RS17725at 339.867 kb on + strand, within ABZR87_RS17725at 339.867 kb on + strand, within ABZR87_RS17725at 339.868 kb on - strand, within ABZR87_RS17725at 339.896 kb on + strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.897 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 339.933 kb on - strand, within ABZR87_RS17725at 340.070 kb on - strandat 340.154 kb on + strand, within ABZR87_RS17730at 340.220 kb on + strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.221 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.293 kb on - strand, within ABZR87_RS17730at 340.302 kb on - strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.676 kb on + strand, within ABZR87_RS17730at 340.773 kb on - strandat 340.822 kb on - strandat 340.822 kb on - strandat 340.829 kb on + strandat 340.831 kb on + strandat 340.832 kb on - strandat 340.847 kb on - strandat 340.847 kb on - strandat 340.847 kb on - strandat 340.872 kb on - strandat 340.872 kb on - strandat 340.924 kb on - strandat 340.970 kb on + strandat 340.970 kb on + strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.971 kb on - strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.973 kb on + strandat 340.974 kb on - strandat 340.974 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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338,272 - -0.2
338,272 - -0.5
338,308 + -1.6
338,308 + -0.0
338,309 - +0.4
338,347 + +1.4
338,348 - +0.1
338,348 - +1.8
338,348 - +0.2
338,397 + +0.1
338,400 + -0.5
338,400 + -1.0
338,401 - +0.4
338,401 - +1.1
338,485 + ABZR87_RS17720 0.15 +0.1
338,485 + ABZR87_RS17720 0.15 +0.3
338,491 + ABZR87_RS17720 0.16 -0.5
338,491 + ABZR87_RS17720 0.16 -1.1
338,491 + ABZR87_RS17720 0.16 -0.0
338,491 + ABZR87_RS17720 0.16 -1.3
338,492 - ABZR87_RS17720 0.16 +0.7
338,633 - ABZR87_RS17720 0.32 +0.4
338,633 - ABZR87_RS17720 0.32 -0.1
338,633 - ABZR87_RS17720 0.32 +1.1
338,654 - ABZR87_RS17720 0.34 +0.3
338,917 + ABZR87_RS17720 0.64 -0.3
339,112 + ABZR87_RS17720 0.85 -0.5
339,182 - -0.3
339,182 - +0.3
339,182 - -1.2
339,457 + ABZR87_RS17725 0.28 +0.6
339,644 + ABZR87_RS17725 0.52 +0.1
339,645 - ABZR87_RS17725 0.52 -1.1
339,645 - ABZR87_RS17725 0.52 -0.6
339,867 + ABZR87_RS17725 0.80 +0.4
339,867 + ABZR87_RS17725 0.80 -2.1
339,868 - ABZR87_RS17725 0.80 +0.5
339,896 + ABZR87_RS17725 0.84 +0.4
339,897 - ABZR87_RS17725 0.84 +1.3
339,897 - ABZR87_RS17725 0.84 +0.7
339,897 - ABZR87_RS17725 0.84 +1.3
339,933 - ABZR87_RS17725 0.88 +0.7
339,933 - ABZR87_RS17725 0.88 -0.4
339,933 - ABZR87_RS17725 0.88 -0.7
339,933 - ABZR87_RS17725 0.88 -0.0
339,933 - ABZR87_RS17725 0.88 -0.1
340,070 - -0.8
340,154 + ABZR87_RS17730 0.11 -0.9
340,220 + ABZR87_RS17730 0.20 -1.3
340,221 - ABZR87_RS17730 0.20 -2.1
340,221 - ABZR87_RS17730 0.20 -1.4
340,221 - ABZR87_RS17730 0.20 -0.7
340,293 - ABZR87_RS17730 0.30 -0.7
340,293 - ABZR87_RS17730 0.30 -1.1
340,293 - ABZR87_RS17730 0.30 -2.4
340,302 - ABZR87_RS17730 0.31 -0.7
340,676 + ABZR87_RS17730 0.83 -0.2
340,676 + ABZR87_RS17730 0.83 -3.1
340,676 + ABZR87_RS17730 0.83 -0.9
340,773 - -1.8
340,822 - +0.2
340,822 - -1.1
340,829 + +0.1
340,831 + +2.5
340,832 - +0.3
340,847 - -0.5
340,847 - -0.6
340,847 - -0.6
340,872 - -0.1
340,872 - -0.0
340,924 - -0.6
340,970 + -1.1
340,970 + -0.0
340,971 - +1.4
340,971 - +0.5
340,971 - -0.7
340,973 + -0.2
340,973 + +0.0
340,973 + -0.7
340,973 + -0.2
340,974 - +1.8
340,974 - -0.2

Or see this region's nucleotide sequence