Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17645 and ABZR87_RS17650 are separated by 87 nucleotides ABZR87_RS17650 and ABZR87_RS17655 are separated by 87 nucleotides ABZR87_RS17655 and ABZR87_RS17660 overlap by 4 nucleotides
ABZR87_RS17645: ABZR87_RS17645 - TolC family protein, at 323,766 to 325,226
_RS17645
ABZR87_RS17650: ABZR87_RS17650 - TetR/AcrR family transcriptional regulator, at 325,314 to 325,928
_RS17650
ABZR87_RS17655: ABZR87_RS17655 - efflux RND transporter periplasmic adaptor subunit, at 326,016 to 327,131
_RS17655
ABZR87_RS17660: ABZR87_RS17660 - efflux RND transporter permease subunit, at 327,128 to 330,250
_RS17660
Position (kb) 326
327
328 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 325.153 kb on + strand at 325.153 kb on + strand at 325.153 kb on + strand at 325.153 kb on + strand at 325.153 kb on + strand at 325.153 kb on + strand at 325.153 kb on + strand at 325.154 kb on - strand at 325.154 kb on - strand at 325.154 kb on - strand at 325.206 kb on - strand at 325.206 kb on - strand at 325.301 kb on + strand at 325.410 kb on + strand, within ABZR87_RS17650 at 325.470 kb on + strand, within ABZR87_RS17650 at 325.470 kb on + strand, within ABZR87_RS17650 at 325.471 kb on - strand, within ABZR87_RS17650 at 325.471 kb on - strand, within ABZR87_RS17650 at 325.471 kb on - strand, within ABZR87_RS17650 at 325.471 kb on - strand, within ABZR87_RS17650 at 325.471 kb on - strand, within ABZR87_RS17650 at 325.471 kb on - strand, within ABZR87_RS17650 at 325.476 kb on + strand, within ABZR87_RS17650 at 325.476 kb on + strand, within ABZR87_RS17650 at 325.710 kb on + strand, within ABZR87_RS17650 at 325.815 kb on + strand, within ABZR87_RS17650 at 325.815 kb on + strand, within ABZR87_RS17650 at 325.833 kb on + strand, within ABZR87_RS17650 at 325.833 kb on + strand, within ABZR87_RS17650 at 325.834 kb on - strand, within ABZR87_RS17650 at 325.869 kb on + strand at 325.869 kb on + strand at 325.870 kb on - strand at 325.870 kb on - strand at 326.036 kb on + strand at 326.037 kb on - strand at 326.042 kb on + strand at 326.042 kb on + strand at 326.043 kb on - strand at 326.043 kb on - strand at 326.043 kb on - strand at 326.430 kb on + strand, within ABZR87_RS17655 at 326.431 kb on - strand, within ABZR87_RS17655 at 326.431 kb on - strand, within ABZR87_RS17655 at 326.641 kb on + strand, within ABZR87_RS17655 at 326.641 kb on + strand, within ABZR87_RS17655 at 326.709 kb on + strand, within ABZR87_RS17655 at 326.723 kb on - strand, within ABZR87_RS17655 at 326.787 kb on + strand, within ABZR87_RS17655 at 326.788 kb on - strand, within ABZR87_RS17655 at 326.788 kb on - strand, within ABZR87_RS17655 at 326.788 kb on - strand, within ABZR87_RS17655 at 326.788 kb on - strand, within ABZR87_RS17655 at 326.833 kb on + strand, within ABZR87_RS17655 at 326.927 kb on - strand, within ABZR87_RS17655 at 327.204 kb on + strand at 327.389 kb on + strand at 327.389 kb on + strand at 327.389 kb on + strand at 327.390 kb on - strand at 327.467 kb on + strand, within ABZR87_RS17660 at 327.546 kb on - strand, within ABZR87_RS17660 at 327.698 kb on + strand, within ABZR87_RS17660 at 327.698 kb on + strand, within ABZR87_RS17660 at 327.698 kb on + strand, within ABZR87_RS17660 at 327.699 kb on - strand, within ABZR87_RS17660 at 327.699 kb on - strand, within ABZR87_RS17660 at 327.732 kb on + strand, within ABZR87_RS17660 at 327.733 kb on - strand, within ABZR87_RS17660 at 327.872 kb on - strand, within ABZR87_RS17660 at 327.872 kb on - strand, within ABZR87_RS17660
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 325,153 + +0.6 325,153 + -0.4 325,153 + +0.5 325,153 + +0.7 325,153 + +0.3 325,153 + +0.1 325,153 + -0.6 325,154 - -0.4 325,154 - -1.2 325,154 - +1.2 325,206 - +1.9 325,206 - +0.4 325,301 + -2.3 325,410 + ABZR87_RS17650 0.16 +0.2 325,470 + ABZR87_RS17650 0.25 -0.4 325,470 + ABZR87_RS17650 0.25 +0.2 325,471 - ABZR87_RS17650 0.26 -1.4 325,471 - ABZR87_RS17650 0.26 -0.3 325,471 - ABZR87_RS17650 0.26 +0.5 325,471 - ABZR87_RS17650 0.26 -1.3 325,471 - ABZR87_RS17650 0.26 +1.7 325,471 - ABZR87_RS17650 0.26 +0.0 325,476 + ABZR87_RS17650 0.26 -0.6 325,476 + ABZR87_RS17650 0.26 +0.9 325,710 + ABZR87_RS17650 0.64 -2.1 325,815 + ABZR87_RS17650 0.81 -1.0 325,815 + ABZR87_RS17650 0.81 +0.4 325,833 + ABZR87_RS17650 0.84 -0.1 325,833 + ABZR87_RS17650 0.84 -0.0 325,834 - ABZR87_RS17650 0.85 -1.5 325,869 + -0.7 325,869 + -1.1 325,870 - -0.8 325,870 - +0.5 326,036 + -0.6 326,037 - +0.4 326,042 + +0.7 326,042 + -0.7 326,043 - -0.7 326,043 - -2.0 326,043 - +3.6 326,430 + ABZR87_RS17655 0.37 -1.3 326,431 - ABZR87_RS17655 0.37 -0.9 326,431 - ABZR87_RS17655 0.37 +0.5 326,641 + ABZR87_RS17655 0.56 -0.5 326,641 + ABZR87_RS17655 0.56 +0.2 326,709 + ABZR87_RS17655 0.62 +0.1 326,723 - ABZR87_RS17655 0.63 +0.4 326,787 + ABZR87_RS17655 0.69 +0.1 326,788 - ABZR87_RS17655 0.69 -1.0 326,788 - ABZR87_RS17655 0.69 +0.2 326,788 - ABZR87_RS17655 0.69 -0.6 326,788 - ABZR87_RS17655 0.69 -1.7 326,833 + ABZR87_RS17655 0.73 -1.2 326,927 - ABZR87_RS17655 0.82 -0.4 327,204 + -0.9 327,389 + +1.0 327,389 + +1.1 327,389 + +0.0 327,390 - +1.3 327,467 + ABZR87_RS17660 0.11 -0.3 327,546 - ABZR87_RS17660 0.13 +0.4 327,698 + ABZR87_RS17660 0.18 -0.1 327,698 + ABZR87_RS17660 0.18 -0.8 327,698 + ABZR87_RS17660 0.18 -0.2 327,699 - ABZR87_RS17660 0.18 +2.6 327,699 - ABZR87_RS17660 0.18 +0.3 327,732 + ABZR87_RS17660 0.19 -0.4 327,733 - ABZR87_RS17660 0.19 +0.3 327,872 - ABZR87_RS17660 0.24 -0.4 327,872 - ABZR87_RS17660 0.24 -0.3
Or see this region's nucleotide sequence