Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17230

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17225 and ABZR87_RS17230 are separated by 31 nucleotidesABZR87_RS17230 and ABZR87_RS17235 are separated by 403 nucleotides ABZR87_RS17225: ABZR87_RS17225 - maltotransferase domain-containing protein, at 219,330 to 222,929 _RS17225 ABZR87_RS17230: ABZR87_RS17230 - glycogen synthase GlgA, at 222,961 to 224,592 _RS17230 ABZR87_RS17235: ABZR87_RS17235 - alkyl hydroperoxide reductase subunit C, at 224,996 to 225,559 _RS17235 Position (kb) 222 223 224 225Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 222.026 kb on - strand, within ABZR87_RS17225at 222.760 kb on + strandat 222.760 kb on + strandat 222.760 kb on + strandat 222.779 kb on - strandat 222.779 kb on - strandat 222.900 kb on - strandat 223.053 kb on + strandat 223.053 kb on + strandat 223.054 kb on - strandat 223.054 kb on - strandat 223.160 kb on + strand, within ABZR87_RS17230at 223.160 kb on + strand, within ABZR87_RS17230at 223.160 kb on + strand, within ABZR87_RS17230at 223.172 kb on + strand, within ABZR87_RS17230at 223.173 kb on - strand, within ABZR87_RS17230at 223.173 kb on - strand, within ABZR87_RS17230at 223.173 kb on - strand, within ABZR87_RS17230at 223.220 kb on + strand, within ABZR87_RS17230at 223.220 kb on + strand, within ABZR87_RS17230at 223.221 kb on - strand, within ABZR87_RS17230at 223.425 kb on - strand, within ABZR87_RS17230at 223.425 kb on - strand, within ABZR87_RS17230at 223.502 kb on + strand, within ABZR87_RS17230at 223.502 kb on + strand, within ABZR87_RS17230at 223.502 kb on + strand, within ABZR87_RS17230at 223.503 kb on - strand, within ABZR87_RS17230at 223.514 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.577 kb on + strand, within ABZR87_RS17230at 223.578 kb on - strand, within ABZR87_RS17230at 223.578 kb on - strand, within ABZR87_RS17230at 223.578 kb on - strand, within ABZR87_RS17230at 223.934 kb on + strand, within ABZR87_RS17230at 223.935 kb on - strand, within ABZR87_RS17230at 223.935 kb on - strand, within ABZR87_RS17230at 223.935 kb on - strand, within ABZR87_RS17230at 223.935 kb on - strand, within ABZR87_RS17230at 223.935 kb on - strand, within ABZR87_RS17230at 224.089 kb on - strand, within ABZR87_RS17230at 224.089 kb on - strand, within ABZR87_RS17230at 224.097 kb on + strand, within ABZR87_RS17230at 224.098 kb on - strand, within ABZR87_RS17230at 224.098 kb on - strand, within ABZR87_RS17230at 224.264 kb on + strand, within ABZR87_RS17230at 224.289 kb on - strand, within ABZR87_RS17230at 224.517 kb on + strandat 224.517 kb on + strandat 224.518 kb on - strandat 224.518 kb on - strandat 224.518 kb on - strandat 224.518 kb on - strandat 224.696 kb on + strandat 224.696 kb on + strandat 224.696 kb on + strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.697 kb on - strandat 224.776 kb on + strandat 224.815 kb on - strandat 224.815 kb on - strandat 224.824 kb on + strandat 224.824 kb on + strandat 224.916 kb on + strandat 224.950 kb on + strandat 224.950 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.995 kb on + strandat 224.996 kb on - strandat 225.010 kb on + strandat 225.010 kb on + strandat 225.010 kb on + strandat 225.011 kb on - strandat 225.011 kb on - strandat 225.011 kb on - strandat 225.167 kb on + strand, within ABZR87_RS17235at 225.167 kb on + strand, within ABZR87_RS17235at 225.167 kb on + strand, within ABZR87_RS17235at 225.168 kb on - strand, within ABZR87_RS17235at 225.168 kb on - strand, within ABZR87_RS17235at 225.168 kb on - strand, within ABZR87_RS17235at 225.200 kb on + strand, within ABZR87_RS17235at 225.200 kb on + strand, within ABZR87_RS17235at 225.200 kb on + strand, within ABZR87_RS17235at 225.201 kb on - strand, within ABZR87_RS17235at 225.201 kb on - strand, within ABZR87_RS17235at 225.201 kb on - strand, within ABZR87_RS17235at 225.557 kb on + strandat 225.557 kb on + strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.558 kb on - strandat 225.565 kb on - strandat 225.565 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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222,026 - ABZR87_RS17225 0.75 -0.0
222,760 + +0.0
222,760 + +0.7
222,760 + +0.7
222,779 - -1.9
222,779 - -1.4
222,900 - -0.9
223,053 + -0.6
223,053 + -1.2
223,054 - +0.3
223,054 - +0.1
223,160 + ABZR87_RS17230 0.12 +0.9
223,160 + ABZR87_RS17230 0.12 +0.3
223,160 + ABZR87_RS17230 0.12 +0.9
223,172 + ABZR87_RS17230 0.13 +1.2
223,173 - ABZR87_RS17230 0.13 -0.6
223,173 - ABZR87_RS17230 0.13 -0.5
223,173 - ABZR87_RS17230 0.13 +0.1
223,220 + ABZR87_RS17230 0.16 -1.7
223,220 + ABZR87_RS17230 0.16 +0.1
223,221 - ABZR87_RS17230 0.16 -0.5
223,425 - ABZR87_RS17230 0.28 -0.3
223,425 - ABZR87_RS17230 0.28 -1.6
223,502 + ABZR87_RS17230 0.33 +0.7
223,502 + ABZR87_RS17230 0.33 +0.0
223,502 + ABZR87_RS17230 0.33 +1.0
223,503 - ABZR87_RS17230 0.33 +0.6
223,514 + ABZR87_RS17230 0.34 +0.8
223,577 + ABZR87_RS17230 0.38 +0.0
223,577 + ABZR87_RS17230 0.38 +0.3
223,577 + ABZR87_RS17230 0.38 -0.5
223,577 + ABZR87_RS17230 0.38 +0.0
223,577 + ABZR87_RS17230 0.38 -0.0
223,578 - ABZR87_RS17230 0.38 +0.7
223,578 - ABZR87_RS17230 0.38 +0.7
223,578 - ABZR87_RS17230 0.38 +2.5
223,934 + ABZR87_RS17230 0.60 +0.3
223,935 - ABZR87_RS17230 0.60 +1.3
223,935 - ABZR87_RS17230 0.60 +0.5
223,935 - ABZR87_RS17230 0.60 -0.2
223,935 - ABZR87_RS17230 0.60 +0.5
223,935 - ABZR87_RS17230 0.60 +0.9
224,089 - ABZR87_RS17230 0.69 +0.4
224,089 - ABZR87_RS17230 0.69 +0.6
224,097 + ABZR87_RS17230 0.70 +0.2
224,098 - ABZR87_RS17230 0.70 +0.1
224,098 - ABZR87_RS17230 0.70 -0.3
224,264 + ABZR87_RS17230 0.80 +1.3
224,289 - ABZR87_RS17230 0.81 -0.7
224,517 + +0.1
224,517 + -1.4
224,518 - -1.2
224,518 - -0.4
224,518 - -1.2
224,518 - -0.0
224,696 + -0.9
224,696 + -1.3
224,696 + -0.4
224,697 - -1.0
224,697 - +1.2
224,697 - +0.4
224,697 - -1.7
224,697 - -1.5
224,776 + -0.1
224,815 - +1.5
224,815 - +0.4
224,824 + -2.1
224,824 + +1.6
224,916 + -0.0
224,950 + -0.8
224,950 + +0.4
224,995 + -1.3
224,995 + +0.6
224,995 + +1.9
224,995 + -0.4
224,995 + -2.2
224,995 + +2.5
224,995 + -1.0
224,995 + -1.7
224,995 + -1.1
224,996 - -1.0
225,010 + +1.2
225,010 + -1.6
225,010 + +0.7
225,011 - +0.5
225,011 - -0.7
225,011 - +0.7
225,167 + ABZR87_RS17235 0.30 -2.8
225,167 + ABZR87_RS17235 0.30 -0.7
225,167 + ABZR87_RS17235 0.30 -1.0
225,168 - ABZR87_RS17235 0.30 +1.4
225,168 - ABZR87_RS17235 0.30 +0.6
225,168 - ABZR87_RS17235 0.30 -0.3
225,200 + ABZR87_RS17235 0.36 -1.0
225,200 + ABZR87_RS17235 0.36 +1.4
225,200 + ABZR87_RS17235 0.36 +0.2
225,201 - ABZR87_RS17235 0.36 -1.8
225,201 - ABZR87_RS17235 0.36 +1.0
225,201 - ABZR87_RS17235 0.36 -0.3
225,557 + -1.1
225,557 + +2.5
225,558 - +0.6
225,558 - -2.5
225,558 - +1.6
225,558 - -0.6
225,558 - -1.5
225,565 - +0.1
225,565 - +0.7

Or see this region's nucleotide sequence