Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS16590

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS16580 and ABZR87_RS16585 overlap by 17 nucleotidesABZR87_RS16585 and ABZR87_RS16590 are separated by 63 nucleotidesABZR87_RS16590 and ABZR87_RS16595 are separated by 19 nucleotides ABZR87_RS16580: ABZR87_RS16580 - ABC transporter ATP-binding protein, at 68,271 to 69,125 _RS16580 ABZR87_RS16585: ABZR87_RS16585 - OsmC family protein, at 69,109 to 69,699 _RS16585 ABZR87_RS16590: ABZR87_RS16590 - ABC transporter permease, at 69,763 to 71,601 _RS16590 ABZR87_RS16595: ABZR87_RS16595 - ABC transporter substrate-binding protein, at 71,621 to 72,754 _RS16595 Position (kb) 69 70 71 72Strain fitness (log2 ratio) -2 -1 0 1 2at 69.046 kb on - strandat 69.243 kb on + strand, within ABZR87_RS16585at 69.329 kb on + strand, within ABZR87_RS16585at 69.330 kb on - strand, within ABZR87_RS16585at 69.330 kb on - strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.444 kb on + strand, within ABZR87_RS16585at 69.445 kb on - strand, within ABZR87_RS16585at 69.445 kb on - strand, within ABZR87_RS16585at 69.445 kb on - strand, within ABZR87_RS16585at 69.506 kb on + strand, within ABZR87_RS16585at 69.507 kb on - strand, within ABZR87_RS16585at 69.559 kb on + strand, within ABZR87_RS16585at 69.656 kb on - strandat 69.681 kb on - strandat 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.986 kb on + strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.987 kb on - strand, within ABZR87_RS16590at 69.993 kb on - strand, within ABZR87_RS16590at 69.993 kb on - strand, within ABZR87_RS16590at 69.993 kb on - strand, within ABZR87_RS16590at 70.061 kb on + strand, within ABZR87_RS16590at 70.062 kb on - strand, within ABZR87_RS16590at 70.199 kb on + strand, within ABZR87_RS16590at 70.199 kb on + strand, within ABZR87_RS16590at 70.199 kb on + strand, within ABZR87_RS16590at 70.200 kb on - strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.346 kb on + strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.347 kb on - strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.472 kb on + strand, within ABZR87_RS16590at 70.562 kb on + strand, within ABZR87_RS16590at 70.562 kb on + strand, within ABZR87_RS16590at 70.562 kb on + strand, within ABZR87_RS16590at 70.582 kb on + strand, within ABZR87_RS16590at 70.582 kb on + strand, within ABZR87_RS16590at 70.595 kb on + strand, within ABZR87_RS16590at 70.595 kb on + strand, within ABZR87_RS16590at 70.595 kb on + strand, within ABZR87_RS16590at 70.596 kb on - strand, within ABZR87_RS16590at 70.596 kb on - strand, within ABZR87_RS16590at 70.739 kb on - strand, within ABZR87_RS16590at 70.739 kb on - strand, within ABZR87_RS16590at 70.739 kb on - strand, within ABZR87_RS16590at 70.739 kb on - strand, within ABZR87_RS16590at 70.826 kb on + strand, within ABZR87_RS16590at 70.826 kb on + strand, within ABZR87_RS16590at 70.826 kb on + strand, within ABZR87_RS16590at 70.826 kb on + strand, within ABZR87_RS16590at 70.827 kb on - strand, within ABZR87_RS16590at 70.955 kb on + strand, within ABZR87_RS16590at 70.955 kb on + strand, within ABZR87_RS16590at 70.955 kb on + strand, within ABZR87_RS16590at 70.955 kb on + strand, within ABZR87_RS16590at 70.955 kb on + strand, within ABZR87_RS16590at 70.955 kb on + strand, within ABZR87_RS16590at 70.956 kb on - strand, within ABZR87_RS16590at 70.956 kb on - strand, within ABZR87_RS16590at 70.956 kb on - strand, within ABZR87_RS16590at 70.956 kb on - strand, within ABZR87_RS16590at 70.956 kb on - strand, within ABZR87_RS16590at 70.956 kb on - strand, within ABZR87_RS16590at 70.958 kb on + strand, within ABZR87_RS16590at 70.958 kb on + strand, within ABZR87_RS16590at 70.958 kb on + strand, within ABZR87_RS16590at 70.958 kb on + strand, within ABZR87_RS16590at 70.958 kb on + strand, within ABZR87_RS16590at 70.958 kb on + strand, within ABZR87_RS16590at 70.958 kb on + strand, within ABZR87_RS16590at 70.959 kb on - strand, within ABZR87_RS16590at 70.959 kb on - strand, within ABZR87_RS16590at 70.959 kb on - strand, within ABZR87_RS16590at 70.959 kb on - strand, within ABZR87_RS16590at 71.105 kb on + strand, within ABZR87_RS16590at 71.106 kb on - strand, within ABZR87_RS16590at 71.116 kb on + strand, within ABZR87_RS16590at 71.116 kb on + strand, within ABZR87_RS16590at 71.276 kb on + strand, within ABZR87_RS16590at 71.276 kb on + strand, within ABZR87_RS16590at 71.276 kb on + strand, within ABZR87_RS16590at 71.276 kb on + strand, within ABZR87_RS16590at 71.277 kb on - strand, within ABZR87_RS16590at 71.457 kb on + strandat 71.457 kb on + strandat 71.458 kb on - strandat 71.458 kb on - strandat 71.459 kb on + strandat 71.534 kb on + strandat 71.534 kb on + strandat 71.534 kb on + strandat 71.534 kb on + strandat 71.534 kb on + strandat 71.534 kb on + strandat 71.534 kb on + strandat 71.535 kb on - strandat 71.535 kb on - strandat 71.535 kb on - strandat 71.535 kb on - strandat 71.538 kb on + strandat 71.538 kb on + strandat 71.538 kb on + strandat 71.538 kb on + strandat 71.539 kb on - strandat 71.539 kb on - strandat 71.539 kb on - strandat 71.539 kb on - strandat 71.567 kb on + strandat 71.568 kb on - strandat 71.883 kb on + strand, within ABZR87_RS16595at 71.883 kb on + strand, within ABZR87_RS16595at 71.883 kb on + strand, within ABZR87_RS16595at 71.884 kb on - strand, within ABZR87_RS16595at 71.954 kb on - strand, within ABZR87_RS16595at 71.954 kb on - strand, within ABZR87_RS16595at 72.006 kb on + strand, within ABZR87_RS16595at 72.006 kb on + strand, within ABZR87_RS16595at 72.006 kb on + strand, within ABZR87_RS16595at 72.006 kb on + strand, within ABZR87_RS16595at 72.007 kb on - strand, within ABZR87_RS16595at 72.007 kb on - strand, within ABZR87_RS16595at 72.007 kb on - strand, within ABZR87_RS16595at 72.084 kb on + strand, within ABZR87_RS16595at 72.084 kb on + strand, within ABZR87_RS16595at 72.085 kb on - strand, within ABZR87_RS16595at 72.085 kb on - strand, within ABZR87_RS16595at 72.087 kb on + strand, within ABZR87_RS16595at 72.088 kb on - strand, within ABZR87_RS16595at 72.088 kb on - strand, within ABZR87_RS16595at 72.174 kb on + strand, within ABZR87_RS16595at 72.264 kb on + strand, within ABZR87_RS16595at 72.410 kb on + strand, within ABZR87_RS16595at 72.410 kb on + strand, within ABZR87_RS16595at 72.411 kb on - strand, within ABZR87_RS16595at 72.411 kb on - strand, within ABZR87_RS16595at 72.429 kb on + strand, within ABZR87_RS16595at 72.429 kb on + strand, within ABZR87_RS16595at 72.430 kb on - strand, within ABZR87_RS16595at 72.430 kb on - strand, within ABZR87_RS16595at 72.430 kb on - strand, within ABZR87_RS16595at 72.561 kb on + strand, within ABZR87_RS16595at 72.561 kb on + strand, within ABZR87_RS16595at 72.561 kb on + strand, within ABZR87_RS16595at 72.561 kb on + strand, within ABZR87_RS16595at 72.561 kb on + strand, within ABZR87_RS16595at 72.561 kb on + strand, within ABZR87_RS16595at 72.562 kb on - strand, within ABZR87_RS16595at 72.562 kb on - strand, within ABZR87_RS16595at 72.562 kb on - strand, within ABZR87_RS16595at 72.562 kb on - strand, within ABZR87_RS16595

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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69,046 - -1.6
69,243 + ABZR87_RS16585 0.23 -0.4
69,329 + ABZR87_RS16585 0.37 +0.1
69,330 - ABZR87_RS16585 0.37 -0.9
69,330 - ABZR87_RS16585 0.37 -0.4
69,444 + ABZR87_RS16585 0.57 -1.0
69,444 + ABZR87_RS16585 0.57 +0.5
69,444 + ABZR87_RS16585 0.57 -0.1
69,444 + ABZR87_RS16585 0.57 -0.6
69,445 - ABZR87_RS16585 0.57 +0.7
69,445 - ABZR87_RS16585 0.57 -1.4
69,445 - ABZR87_RS16585 0.57 +0.5
69,506 + ABZR87_RS16585 0.67 +0.2
69,507 - ABZR87_RS16585 0.67 +0.2
69,559 + ABZR87_RS16585 0.76 +1.2
69,656 - -0.2
69,681 - -1.5
69,986 + ABZR87_RS16590 0.12 -0.5
69,986 + ABZR87_RS16590 0.12 +0.6
69,986 + ABZR87_RS16590 0.12 +0.0
69,986 + ABZR87_RS16590 0.12 +0.1
69,986 + ABZR87_RS16590 0.12 -0.1
69,987 - ABZR87_RS16590 0.12 -1.4
69,987 - ABZR87_RS16590 0.12 -1.0
69,987 - ABZR87_RS16590 0.12 -0.4
69,987 - ABZR87_RS16590 0.12 +0.5
69,993 - ABZR87_RS16590 0.13 +0.3
69,993 - ABZR87_RS16590 0.13 -0.7
69,993 - ABZR87_RS16590 0.13 -0.3
70,061 + ABZR87_RS16590 0.16 +1.0
70,062 - ABZR87_RS16590 0.16 -1.8
70,199 + ABZR87_RS16590 0.24 +1.0
70,199 + ABZR87_RS16590 0.24 -0.2
70,199 + ABZR87_RS16590 0.24 -0.0
70,200 - ABZR87_RS16590 0.24 +0.2
70,346 + ABZR87_RS16590 0.32 -0.3
70,346 + ABZR87_RS16590 0.32 +0.3
70,346 + ABZR87_RS16590 0.32 -0.2
70,346 + ABZR87_RS16590 0.32 -0.1
70,346 + ABZR87_RS16590 0.32 +0.3
70,346 + ABZR87_RS16590 0.32 +0.1
70,346 + ABZR87_RS16590 0.32 +0.4
70,346 + ABZR87_RS16590 0.32 +0.6
70,347 - ABZR87_RS16590 0.32 +0.6
70,347 - ABZR87_RS16590 0.32 -0.8
70,347 - ABZR87_RS16590 0.32 +0.0
70,347 - ABZR87_RS16590 0.32 -0.4
70,347 - ABZR87_RS16590 0.32 -0.0
70,472 + ABZR87_RS16590 0.39 -0.3
70,472 + ABZR87_RS16590 0.39 +0.2
70,472 + ABZR87_RS16590 0.39 +0.5
70,472 + ABZR87_RS16590 0.39 +1.3
70,562 + ABZR87_RS16590 0.43 -0.3
70,562 + ABZR87_RS16590 0.43 -0.4
70,562 + ABZR87_RS16590 0.43 -1.4
70,582 + ABZR87_RS16590 0.45 +0.7
70,582 + ABZR87_RS16590 0.45 +0.4
70,595 + ABZR87_RS16590 0.45 -0.5
70,595 + ABZR87_RS16590 0.45 +0.1
70,595 + ABZR87_RS16590 0.45 -2.7
70,596 - ABZR87_RS16590 0.45 -0.9
70,596 - ABZR87_RS16590 0.45 +0.8
70,739 - ABZR87_RS16590 0.53 -0.9
70,739 - ABZR87_RS16590 0.53 -0.6
70,739 - ABZR87_RS16590 0.53 -0.2
70,739 - ABZR87_RS16590 0.53 -0.7
70,826 + ABZR87_RS16590 0.58 +0.0
70,826 + ABZR87_RS16590 0.58 -0.1
70,826 + ABZR87_RS16590 0.58 -0.1
70,826 + ABZR87_RS16590 0.58 +2.6
70,827 - ABZR87_RS16590 0.58 -0.1
70,955 + ABZR87_RS16590 0.65 -0.3
70,955 + ABZR87_RS16590 0.65 -1.4
70,955 + ABZR87_RS16590 0.65 +1.3
70,955 + ABZR87_RS16590 0.65 -0.6
70,955 + ABZR87_RS16590 0.65 +1.1
70,955 + ABZR87_RS16590 0.65 +0.6
70,956 - ABZR87_RS16590 0.65 -0.0
70,956 - ABZR87_RS16590 0.65 -0.5
70,956 - ABZR87_RS16590 0.65 +0.0
70,956 - ABZR87_RS16590 0.65 -2.0
70,956 - ABZR87_RS16590 0.65 +0.7
70,956 - ABZR87_RS16590 0.65 +1.2
70,958 + ABZR87_RS16590 0.65 -0.1
70,958 + ABZR87_RS16590 0.65 +0.0
70,958 + ABZR87_RS16590 0.65 -1.0
70,958 + ABZR87_RS16590 0.65 -0.7
70,958 + ABZR87_RS16590 0.65 -0.4
70,958 + ABZR87_RS16590 0.65 +1.6
70,958 + ABZR87_RS16590 0.65 +0.5
70,959 - ABZR87_RS16590 0.65 +0.7
70,959 - ABZR87_RS16590 0.65 +0.3
70,959 - ABZR87_RS16590 0.65 +1.3
70,959 - ABZR87_RS16590 0.65 -0.6
71,105 + ABZR87_RS16590 0.73 +0.8
71,106 - ABZR87_RS16590 0.73 +0.0
71,116 + ABZR87_RS16590 0.74 -2.1
71,116 + ABZR87_RS16590 0.74 +1.0
71,276 + ABZR87_RS16590 0.82 -0.2
71,276 + ABZR87_RS16590 0.82 -0.3
71,276 + ABZR87_RS16590 0.82 -0.3
71,276 + ABZR87_RS16590 0.82 +0.2
71,277 - ABZR87_RS16590 0.82 -0.9
71,457 + +0.6
71,457 + +0.4
71,458 - +1.6
71,458 - +0.4
71,459 + +1.3
71,534 + -0.2
71,534 + +0.6
71,534 + -0.5
71,534 + -0.3
71,534 + -0.0
71,534 + -0.1
71,534 + -2.2
71,535 - -1.1
71,535 - -0.2
71,535 - -0.7
71,535 - +0.1
71,538 + +0.6
71,538 + -0.1
71,538 + +0.8
71,538 + -1.0
71,539 - +0.2
71,539 - -0.2
71,539 - +0.3
71,539 - +0.3
71,567 + +1.0
71,568 - -0.1
71,883 + ABZR87_RS16595 0.23 +1.3
71,883 + ABZR87_RS16595 0.23 -0.2
71,883 + ABZR87_RS16595 0.23 +0.7
71,884 - ABZR87_RS16595 0.23 +0.7
71,954 - ABZR87_RS16595 0.29 +0.2
71,954 - ABZR87_RS16595 0.29 +0.4
72,006 + ABZR87_RS16595 0.34 -0.8
72,006 + ABZR87_RS16595 0.34 +0.2
72,006 + ABZR87_RS16595 0.34 -0.1
72,006 + ABZR87_RS16595 0.34 +0.4
72,007 - ABZR87_RS16595 0.34 -0.6
72,007 - ABZR87_RS16595 0.34 +1.7
72,007 - ABZR87_RS16595 0.34 +0.1
72,084 + ABZR87_RS16595 0.41 -1.4
72,084 + ABZR87_RS16595 0.41 -0.9
72,085 - ABZR87_RS16595 0.41 -0.3
72,085 - ABZR87_RS16595 0.41 +0.8
72,087 + ABZR87_RS16595 0.41 -1.1
72,088 - ABZR87_RS16595 0.41 +0.9
72,088 - ABZR87_RS16595 0.41 -0.2
72,174 + ABZR87_RS16595 0.49 -0.1
72,264 + ABZR87_RS16595 0.57 -1.0
72,410 + ABZR87_RS16595 0.70 -0.6
72,410 + ABZR87_RS16595 0.70 -0.4
72,411 - ABZR87_RS16595 0.70 +0.8
72,411 - ABZR87_RS16595 0.70 +0.8
72,429 + ABZR87_RS16595 0.71 -1.0
72,429 + ABZR87_RS16595 0.71 +0.2
72,430 - ABZR87_RS16595 0.71 +2.6
72,430 - ABZR87_RS16595 0.71 +0.1
72,430 - ABZR87_RS16595 0.71 -0.0
72,561 + ABZR87_RS16595 0.83 +0.1
72,561 + ABZR87_RS16595 0.83 -1.7
72,561 + ABZR87_RS16595 0.83 -0.1
72,561 + ABZR87_RS16595 0.83 -1.2
72,561 + ABZR87_RS16595 0.83 -0.5
72,561 + ABZR87_RS16595 0.83 +1.2
72,562 - ABZR87_RS16595 0.83 +0.1
72,562 - ABZR87_RS16595 0.83 -0.5
72,562 - ABZR87_RS16595 0.83 -1.9
72,562 - ABZR87_RS16595 0.83 +0.1

Or see this region's nucleotide sequence