Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14730 and ABZR87_RS14735 are separated by 13 nucleotides ABZR87_RS14735 and ABZR87_RS14740 are separated by 13 nucleotides ABZR87_RS14740 and ABZR87_RS14745 are separated by 48 nucleotides ABZR87_RS14745 and ABZR87_RS14750 are separated by 79 nucleotides
ABZR87_RS14730: ABZR87_RS14730 - urease subunit alpha, at 3,110,667 to 3,112,385
_RS14730
ABZR87_RS14735: ABZR87_RS14735 - urease subunit beta, at 3,112,399 to 3,112,704
_RS14735
ABZR87_RS14740: ABZR87_RS14740 - HupE/UreJ family protein, at 3,112,718 to 3,113,335
_RS14740
ABZR87_RS14745: ABZR87_RS14745 - urease subunit gamma, at 3,113,384 to 3,113,686
_RS14745
ABZR87_RS14750: ABZR87_RS14750 - urease accessory protein UreD, at 3,113,766 to 3,114,653
_RS14750
Position (kb)
3112
3113
3114 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3111.823 kb on + strand, within ABZR87_RS14730 at 3111.856 kb on + strand, within ABZR87_RS14730 at 3111.886 kb on + strand, within ABZR87_RS14730 at 3111.886 kb on + strand, within ABZR87_RS14730 at 3111.887 kb on - strand, within ABZR87_RS14730 at 3111.887 kb on - strand, within ABZR87_RS14730 at 3111.887 kb on - strand, within ABZR87_RS14730 at 3112.357 kb on + strand at 3112.358 kb on - strand at 3112.434 kb on - strand, within ABZR87_RS14735 at 3112.434 kb on - strand, within ABZR87_RS14735 at 3112.434 kb on - strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.577 kb on + strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.578 kb on - strand, within ABZR87_RS14735 at 3112.586 kb on + strand, within ABZR87_RS14735 at 3112.621 kb on - strand, within ABZR87_RS14735 at 3112.621 kb on - strand, within ABZR87_RS14735 at 3112.873 kb on - strand, within ABZR87_RS14740 at 3113.284 kb on + strand at 3113.284 kb on + strand at 3113.285 kb on - strand at 3113.285 kb on - strand at 3113.285 kb on - strand at 3113.347 kb on + strand at 3113.511 kb on + strand, within ABZR87_RS14745 at 3113.771 kb on + strand at 3113.771 kb on + strand at 3113.772 kb on - strand at 3113.772 kb on - strand at 3113.956 kb on + strand, within ABZR87_RS14750 at 3113.956 kb on + strand, within ABZR87_RS14750
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 3,111,823 + ABZR87_RS14730 0.67 +0.3 3,111,856 + ABZR87_RS14730 0.69 -0.5 3,111,886 + ABZR87_RS14730 0.71 -0.2 3,111,886 + ABZR87_RS14730 0.71 +0.3 3,111,887 - ABZR87_RS14730 0.71 +1.2 3,111,887 - ABZR87_RS14730 0.71 -0.7 3,111,887 - ABZR87_RS14730 0.71 +0.1 3,112,357 + -0.5 3,112,358 - -1.7 3,112,434 - ABZR87_RS14735 0.11 +0.2 3,112,434 - ABZR87_RS14735 0.11 +0.1 3,112,434 - ABZR87_RS14735 0.11 +0.5 3,112,577 + ABZR87_RS14735 0.58 +0.6 3,112,577 + ABZR87_RS14735 0.58 -0.7 3,112,577 + ABZR87_RS14735 0.58 -0.8 3,112,577 + ABZR87_RS14735 0.58 -2.0 3,112,578 - ABZR87_RS14735 0.58 -0.4 3,112,578 - ABZR87_RS14735 0.58 +0.5 3,112,578 - ABZR87_RS14735 0.58 -0.8 3,112,578 - ABZR87_RS14735 0.58 -1.2 3,112,578 - ABZR87_RS14735 0.58 -1.4 3,112,578 - ABZR87_RS14735 0.58 +0.8 3,112,586 + ABZR87_RS14735 0.61 -0.2 3,112,621 - ABZR87_RS14735 0.73 +0.6 3,112,621 - ABZR87_RS14735 0.73 -0.6 3,112,873 - ABZR87_RS14740 0.25 +1.7 3,113,284 + -1.0 3,113,284 + +1.7 3,113,285 - +1.7 3,113,285 - +0.5 3,113,285 - +2.2 3,113,347 + -1.7 3,113,511 + ABZR87_RS14745 0.42 +0.7 3,113,771 + -0.4 3,113,771 + +0.0 3,113,772 - -0.4 3,113,772 - -0.4 3,113,956 + ABZR87_RS14750 0.21 -0.3 3,113,956 + ABZR87_RS14750 0.21 +0.9
Or see this region's nucleotide sequence