Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09480

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09475 and ABZR87_RS09480 are separated by 45 nucleotidesABZR87_RS09480 and ABZR87_RS09485 are separated by 194 nucleotidesABZR87_RS09485 and ABZR87_RS09490 are separated by 3 nucleotides ABZR87_RS09475: ABZR87_RS09475 - 30S ribosomal protein S1, at 2,012,616 to 2,014,304 _RS09475 ABZR87_RS09480: ABZR87_RS09480 - integration host factor subunit beta, at 2,014,350 to 2,014,778 _RS09480 ABZR87_RS09485: ABZR87_RS09485 - lipopolysaccharide assembly protein LapA domain-containing protein, at 2,014,973 to 2,015,296 _RS09485 ABZR87_RS09490: ABZR87_RS09490 - lipopolysaccharide assembly protein LapB, at 2,015,300 to 2,016,574 _RS09490 Position (kb) 2014 2015Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2014.302 kb on + strandat 2014.303 kb on - strandat 2014.324 kb on + strandat 2014.693 kb on + strand, within ABZR87_RS09480at 2014.744 kb on + strandat 2014.796 kb on + strandat 2014.796 kb on + strandat 2014.796 kb on + strandat 2014.797 kb on - strandat 2014.797 kb on - strandat 2014.797 kb on - strandat 2014.797 kb on - strandat 2014.832 kb on + strandat 2014.863 kb on + strandat 2014.881 kb on + strandat 2014.882 kb on - strandat 2014.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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2,014,302 + -0.8
2,014,303 - +0.3
2,014,324 + -2.7
2,014,693 + ABZR87_RS09480 0.80 +0.7
2,014,744 + +1.8
2,014,796 + -3.3
2,014,796 + -0.3
2,014,796 + +0.4
2,014,797 - -1.3
2,014,797 - -1.2
2,014,797 - +0.3
2,014,797 - -0.6
2,014,832 + +0.4
2,014,863 + -0.0
2,014,881 + +0.6
2,014,882 - -0.8
2,014,892 + -1.1

Or see this region's nucleotide sequence