Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08840

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08830 and ABZR87_RS08835 are separated by 82 nucleotidesABZR87_RS08835 and ABZR87_RS08840 are separated by 129 nucleotidesABZR87_RS08840 and ABZR87_RS08845 are separated by 80 nucleotides ABZR87_RS08830: ABZR87_RS08830 - amino acid aminotransferase, at 1,873,898 to 1,875,103 _RS08830 ABZR87_RS08835: ABZR87_RS08835 - hypothetical protein, at 1,875,186 to 1,875,899 _RS08835 ABZR87_RS08840: ABZR87_RS08840 - acetoacetate--CoA ligase, at 1,876,029 to 1,878,083 _RS08840 ABZR87_RS08845: ABZR87_RS08845 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,878,164 to 1,879,675 _RS08845 Position (kb) 1876 1877 1878 1879Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1875.169 kb on + strandat 1875.169 kb on + strandat 1875.169 kb on + strandat 1875.170 kb on - strandat 1875.170 kb on - strandat 1875.568 kb on + strand, within ABZR87_RS08835at 1875.568 kb on + strand, within ABZR87_RS08835at 1875.568 kb on + strand, within ABZR87_RS08835at 1875.569 kb on - strand, within ABZR87_RS08835at 1875.569 kb on - strand, within ABZR87_RS08835at 1875.569 kb on - strand, within ABZR87_RS08835at 1875.569 kb on - strand, within ABZR87_RS08835at 1875.569 kb on - strand, within ABZR87_RS08835at 1875.891 kb on + strandat 1875.892 kb on - strandat 1875.892 kb on - strandat 1875.892 kb on - strandat 1875.954 kb on + strandat 1875.954 kb on + strandat 1875.955 kb on - strandat 1875.955 kb on - strandat 1875.955 kb on - strandat 1875.955 kb on - strandat 1875.955 kb on - strandat 1875.955 kb on - strandat 1876.030 kb on + strandat 1876.030 kb on + strandat 1876.030 kb on + strandat 1876.030 kb on + strandat 1876.103 kb on - strandat 1876.103 kb on - strandat 1876.111 kb on + strandat 1876.111 kb on + strandat 1876.112 kb on - strandat 1876.245 kb on + strand, within ABZR87_RS08840at 1876.245 kb on + strand, within ABZR87_RS08840at 1876.245 kb on + strand, within ABZR87_RS08840at 1876.245 kb on + strand, within ABZR87_RS08840at 1876.246 kb on - strand, within ABZR87_RS08840at 1876.246 kb on - strand, within ABZR87_RS08840at 1876.246 kb on - strand, within ABZR87_RS08840at 1876.246 kb on - strand, within ABZR87_RS08840at 1876.256 kb on + strand, within ABZR87_RS08840at 1876.257 kb on - strand, within ABZR87_RS08840at 1876.316 kb on + strand, within ABZR87_RS08840at 1876.317 kb on - strand, within ABZR87_RS08840at 1876.317 kb on - strand, within ABZR87_RS08840at 1876.403 kb on + strand, within ABZR87_RS08840at 1876.403 kb on + strand, within ABZR87_RS08840at 1876.404 kb on - strand, within ABZR87_RS08840at 1876.498 kb on + strand, within ABZR87_RS08840at 1876.498 kb on + strand, within ABZR87_RS08840at 1876.498 kb on + strand, within ABZR87_RS08840at 1876.499 kb on - strand, within ABZR87_RS08840at 1876.499 kb on - strand, within ABZR87_RS08840at 1876.561 kb on + strand, within ABZR87_RS08840at 1876.561 kb on + strand, within ABZR87_RS08840at 1876.562 kb on - strand, within ABZR87_RS08840at 1876.562 kb on - strand, within ABZR87_RS08840at 1876.573 kb on + strand, within ABZR87_RS08840at 1876.573 kb on + strand, within ABZR87_RS08840at 1876.573 kb on + strand, within ABZR87_RS08840at 1876.574 kb on - strand, within ABZR87_RS08840at 1876.574 kb on - strand, within ABZR87_RS08840at 1876.574 kb on - strand, within ABZR87_RS08840at 1876.741 kb on + strand, within ABZR87_RS08840at 1876.741 kb on + strand, within ABZR87_RS08840at 1876.768 kb on - strand, within ABZR87_RS08840at 1876.768 kb on - strand, within ABZR87_RS08840at 1876.768 kb on - strand, within ABZR87_RS08840at 1876.837 kb on + strand, within ABZR87_RS08840at 1876.837 kb on + strand, within ABZR87_RS08840at 1876.837 kb on + strand, within ABZR87_RS08840at 1876.837 kb on + strand, within ABZR87_RS08840at 1876.849 kb on + strand, within ABZR87_RS08840at 1876.850 kb on - strand, within ABZR87_RS08840at 1876.850 kb on - strand, within ABZR87_RS08840at 1877.012 kb on + strand, within ABZR87_RS08840at 1877.012 kb on + strand, within ABZR87_RS08840at 1877.012 kb on + strand, within ABZR87_RS08840at 1877.013 kb on - strand, within ABZR87_RS08840at 1877.013 kb on - strand, within ABZR87_RS08840at 1877.013 kb on - strand, within ABZR87_RS08840at 1877.013 kb on - strand, within ABZR87_RS08840at 1877.013 kb on - strand, within ABZR87_RS08840at 1877.027 kb on + strand, within ABZR87_RS08840at 1877.044 kb on + strand, within ABZR87_RS08840at 1877.045 kb on - strand, within ABZR87_RS08840at 1877.045 kb on - strand, within ABZR87_RS08840at 1877.045 kb on - strand, within ABZR87_RS08840at 1877.116 kb on + strand, within ABZR87_RS08840at 1877.116 kb on + strand, within ABZR87_RS08840at 1877.117 kb on - strand, within ABZR87_RS08840at 1877.117 kb on - strand, within ABZR87_RS08840at 1877.117 kb on - strand, within ABZR87_RS08840at 1877.125 kb on + strand, within ABZR87_RS08840at 1877.125 kb on + strand, within ABZR87_RS08840at 1877.126 kb on - strand, within ABZR87_RS08840at 1877.126 kb on - strand, within ABZR87_RS08840at 1877.126 kb on - strand, within ABZR87_RS08840at 1877.126 kb on - strand, within ABZR87_RS08840at 1877.239 kb on + strand, within ABZR87_RS08840at 1877.239 kb on + strand, within ABZR87_RS08840at 1877.289 kb on + strand, within ABZR87_RS08840at 1877.289 kb on + strand, within ABZR87_RS08840at 1877.289 kb on + strand, within ABZR87_RS08840at 1877.289 kb on + strand, within ABZR87_RS08840at 1877.290 kb on - strand, within ABZR87_RS08840at 1877.290 kb on - strand, within ABZR87_RS08840at 1877.449 kb on + strand, within ABZR87_RS08840at 1877.449 kb on + strand, within ABZR87_RS08840at 1877.449 kb on + strand, within ABZR87_RS08840at 1877.450 kb on - strand, within ABZR87_RS08840at 1877.450 kb on - strand, within ABZR87_RS08840at 1877.450 kb on - strand, within ABZR87_RS08840at 1877.455 kb on + strand, within ABZR87_RS08840at 1877.597 kb on + strand, within ABZR87_RS08840at 1877.608 kb on + strand, within ABZR87_RS08840at 1877.608 kb on + strand, within ABZR87_RS08840at 1877.608 kb on + strand, within ABZR87_RS08840at 1877.608 kb on + strand, within ABZR87_RS08840at 1877.609 kb on - strand, within ABZR87_RS08840at 1877.609 kb on - strand, within ABZR87_RS08840at 1877.609 kb on - strand, within ABZR87_RS08840at 1877.791 kb on + strand, within ABZR87_RS08840at 1877.791 kb on + strand, within ABZR87_RS08840at 1877.792 kb on - strand, within ABZR87_RS08840at 1877.792 kb on - strand, within ABZR87_RS08840at 1877.792 kb on - strand, within ABZR87_RS08840at 1877.792 kb on - strand, within ABZR87_RS08840at 1877.792 kb on - strand, within ABZR87_RS08840at 1877.885 kb on - strandat 1877.948 kb on - strandat 1878.007 kb on + strandat 1878.007 kb on + strandat 1878.007 kb on + strandat 1878.008 kb on - strandat 1878.008 kb on - strandat 1878.127 kb on + strandat 1878.127 kb on + strandat 1878.128 kb on - strandat 1878.128 kb on - strandat 1878.186 kb on + strandat 1878.186 kb on + strandat 1878.186 kb on + strandat 1878.186 kb on + strandat 1878.186 kb on + strandat 1878.186 kb on + strandat 1878.187 kb on - strandat 1878.187 kb on - strandat 1878.187 kb on - strandat 1878.201 kb on + strandat 1878.216 kb on + strandat 1878.312 kb on + strandat 1878.366 kb on + strand, within ABZR87_RS08845at 1878.367 kb on - strand, within ABZR87_RS08845at 1878.367 kb on - strand, within ABZR87_RS08845at 1878.717 kb on + strand, within ABZR87_RS08845at 1878.717 kb on + strand, within ABZR87_RS08845at 1878.717 kb on + strand, within ABZR87_RS08845at 1878.717 kb on + strand, within ABZR87_RS08845at 1878.717 kb on + strand, within ABZR87_RS08845at 1878.717 kb on + strand, within ABZR87_RS08845at 1878.717 kb on + strand, within ABZR87_RS08845at 1878.718 kb on - strand, within ABZR87_RS08845at 1878.718 kb on - strand, within ABZR87_RS08845at 1878.735 kb on + strand, within ABZR87_RS08845at 1878.735 kb on + strand, within ABZR87_RS08845at 1878.736 kb on - strand, within ABZR87_RS08845at 1878.736 kb on - strand, within ABZR87_RS08845at 1878.749 kb on - strand, within ABZR87_RS08845

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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1,875,169 + +1.5
1,875,169 + -0.1
1,875,169 + -0.6
1,875,170 - -0.5
1,875,170 - -0.2
1,875,568 + ABZR87_RS08835 0.54 -0.7
1,875,568 + ABZR87_RS08835 0.54 +3.0
1,875,568 + ABZR87_RS08835 0.54 +0.3
1,875,569 - ABZR87_RS08835 0.54 -0.3
1,875,569 - ABZR87_RS08835 0.54 -1.3
1,875,569 - ABZR87_RS08835 0.54 -1.0
1,875,569 - ABZR87_RS08835 0.54 -0.1
1,875,569 - ABZR87_RS08835 0.54 +0.9
1,875,891 + -0.7
1,875,892 - -0.7
1,875,892 - -0.1
1,875,892 - -0.2
1,875,954 + -0.2
1,875,954 + -0.2
1,875,955 - -0.9
1,875,955 - -0.5
1,875,955 - -0.5
1,875,955 - +0.1
1,875,955 - +0.1
1,875,955 - -0.5
1,876,030 + -0.3
1,876,030 + +0.8
1,876,030 + -0.4
1,876,030 + +0.8
1,876,103 - -0.6
1,876,103 - -1.0
1,876,111 + +0.1
1,876,111 + -0.9
1,876,112 - -1.0
1,876,245 + ABZR87_RS08840 0.11 -1.2
1,876,245 + ABZR87_RS08840 0.11 -1.5
1,876,245 + ABZR87_RS08840 0.11 -0.9
1,876,245 + ABZR87_RS08840 0.11 -1.0
1,876,246 - ABZR87_RS08840 0.11 +0.6
1,876,246 - ABZR87_RS08840 0.11 -0.1
1,876,246 - ABZR87_RS08840 0.11 -0.5
1,876,246 - ABZR87_RS08840 0.11 +1.3
1,876,256 + ABZR87_RS08840 0.11 +1.5
1,876,257 - ABZR87_RS08840 0.11 -2.1
1,876,316 + ABZR87_RS08840 0.14 +0.6
1,876,317 - ABZR87_RS08840 0.14 -0.1
1,876,317 - ABZR87_RS08840 0.14 -1.8
1,876,403 + ABZR87_RS08840 0.18 +1.3
1,876,403 + ABZR87_RS08840 0.18 +1.6
1,876,404 - ABZR87_RS08840 0.18 -0.2
1,876,498 + ABZR87_RS08840 0.23 +0.7
1,876,498 + ABZR87_RS08840 0.23 -0.2
1,876,498 + ABZR87_RS08840 0.23 -0.0
1,876,499 - ABZR87_RS08840 0.23 +0.0
1,876,499 - ABZR87_RS08840 0.23 +0.4
1,876,561 + ABZR87_RS08840 0.26 +0.4
1,876,561 + ABZR87_RS08840 0.26 -0.1
1,876,562 - ABZR87_RS08840 0.26 -0.3
1,876,562 - ABZR87_RS08840 0.26 +0.4
1,876,573 + ABZR87_RS08840 0.26 -0.2
1,876,573 + ABZR87_RS08840 0.26 +0.5
1,876,573 + ABZR87_RS08840 0.26 +0.3
1,876,574 - ABZR87_RS08840 0.27 -1.7
1,876,574 - ABZR87_RS08840 0.27 +0.3
1,876,574 - ABZR87_RS08840 0.27 +0.3
1,876,741 + ABZR87_RS08840 0.35 -1.0
1,876,741 + ABZR87_RS08840 0.35 +0.3
1,876,768 - ABZR87_RS08840 0.36 +0.9
1,876,768 - ABZR87_RS08840 0.36 +0.3
1,876,768 - ABZR87_RS08840 0.36 -0.7
1,876,837 + ABZR87_RS08840 0.39 +2.0
1,876,837 + ABZR87_RS08840 0.39 +1.1
1,876,837 + ABZR87_RS08840 0.39 -0.1
1,876,837 + ABZR87_RS08840 0.39 -0.5
1,876,849 + ABZR87_RS08840 0.40 +0.1
1,876,850 - ABZR87_RS08840 0.40 +0.5
1,876,850 - ABZR87_RS08840 0.40 +0.2
1,877,012 + ABZR87_RS08840 0.48 -0.5
1,877,012 + ABZR87_RS08840 0.48 -1.0
1,877,012 + ABZR87_RS08840 0.48 -0.2
1,877,013 - ABZR87_RS08840 0.48 +0.1
1,877,013 - ABZR87_RS08840 0.48 -0.4
1,877,013 - ABZR87_RS08840 0.48 -0.6
1,877,013 - ABZR87_RS08840 0.48 +2.1
1,877,013 - ABZR87_RS08840 0.48 +0.7
1,877,027 + ABZR87_RS08840 0.49 +0.4
1,877,044 + ABZR87_RS08840 0.49 +0.3
1,877,045 - ABZR87_RS08840 0.49 -0.2
1,877,045 - ABZR87_RS08840 0.49 -0.4
1,877,045 - ABZR87_RS08840 0.49 -2.6
1,877,116 + ABZR87_RS08840 0.53 +0.3
1,877,116 + ABZR87_RS08840 0.53 +1.5
1,877,117 - ABZR87_RS08840 0.53 -0.4
1,877,117 - ABZR87_RS08840 0.53 -0.5
1,877,117 - ABZR87_RS08840 0.53 +0.2
1,877,125 + ABZR87_RS08840 0.53 +0.4
1,877,125 + ABZR87_RS08840 0.53 -0.6
1,877,126 - ABZR87_RS08840 0.53 +0.2
1,877,126 - ABZR87_RS08840 0.53 +0.6
1,877,126 - ABZR87_RS08840 0.53 +0.2
1,877,126 - ABZR87_RS08840 0.53 +0.7
1,877,239 + ABZR87_RS08840 0.59 +0.4
1,877,239 + ABZR87_RS08840 0.59 +0.1
1,877,289 + ABZR87_RS08840 0.61 +0.9
1,877,289 + ABZR87_RS08840 0.61 -0.4
1,877,289 + ABZR87_RS08840 0.61 +0.3
1,877,289 + ABZR87_RS08840 0.61 +0.1
1,877,290 - ABZR87_RS08840 0.61 -1.1
1,877,290 - ABZR87_RS08840 0.61 -0.7
1,877,449 + ABZR87_RS08840 0.69 -0.8
1,877,449 + ABZR87_RS08840 0.69 +0.0
1,877,449 + ABZR87_RS08840 0.69 -0.1
1,877,450 - ABZR87_RS08840 0.69 +0.6
1,877,450 - ABZR87_RS08840 0.69 -0.8
1,877,450 - ABZR87_RS08840 0.69 -0.3
1,877,455 + ABZR87_RS08840 0.69 -0.4
1,877,597 + ABZR87_RS08840 0.76 +0.3
1,877,608 + ABZR87_RS08840 0.77 +0.3
1,877,608 + ABZR87_RS08840 0.77 +1.6
1,877,608 + ABZR87_RS08840 0.77 -0.9
1,877,608 + ABZR87_RS08840 0.77 -0.1
1,877,609 - ABZR87_RS08840 0.77 -0.2
1,877,609 - ABZR87_RS08840 0.77 +2.6
1,877,609 - ABZR87_RS08840 0.77 -0.1
1,877,791 + ABZR87_RS08840 0.86 +0.5
1,877,791 + ABZR87_RS08840 0.86 -0.1
1,877,792 - ABZR87_RS08840 0.86 -1.2
1,877,792 - ABZR87_RS08840 0.86 -1.2
1,877,792 - ABZR87_RS08840 0.86 -0.0
1,877,792 - ABZR87_RS08840 0.86 +1.0
1,877,792 - ABZR87_RS08840 0.86 -0.6
1,877,885 - +0.5
1,877,948 - +0.1
1,878,007 + +0.6
1,878,007 + -0.2
1,878,007 + -0.2
1,878,008 - -0.1
1,878,008 - +0.7
1,878,127 + +0.4
1,878,127 + +0.8
1,878,128 - -0.0
1,878,128 - -0.9
1,878,186 + +0.1
1,878,186 + +0.1
1,878,186 + +0.0
1,878,186 + -0.7
1,878,186 + -1.9
1,878,186 + -0.3
1,878,187 - -0.6
1,878,187 - +0.1
1,878,187 - -0.9
1,878,201 + -0.2
1,878,216 + +0.7
1,878,312 + -0.2
1,878,366 + ABZR87_RS08845 0.13 -1.2
1,878,367 - ABZR87_RS08845 0.13 -0.5
1,878,367 - ABZR87_RS08845 0.13 -1.2
1,878,717 + ABZR87_RS08845 0.37 +0.2
1,878,717 + ABZR87_RS08845 0.37 +1.2
1,878,717 + ABZR87_RS08845 0.37 +0.3
1,878,717 + ABZR87_RS08845 0.37 +0.7
1,878,717 + ABZR87_RS08845 0.37 -0.8
1,878,717 + ABZR87_RS08845 0.37 +0.1
1,878,717 + ABZR87_RS08845 0.37 -1.0
1,878,718 - ABZR87_RS08845 0.37 +0.8
1,878,718 - ABZR87_RS08845 0.37 -1.3
1,878,735 + ABZR87_RS08845 0.38 -0.2
1,878,735 + ABZR87_RS08845 0.38 +0.6
1,878,736 - ABZR87_RS08845 0.38 +0.4
1,878,736 - ABZR87_RS08845 0.38 -0.6
1,878,749 - ABZR87_RS08845 0.39 +1.1

Or see this region's nucleotide sequence