Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08010 and ABZR87_RS08015 are separated by 63 nucleotides ABZR87_RS08015 and ABZR87_RS08020 are separated by 105 nucleotides ABZR87_RS08020 and ABZR87_RS08025 are separated by 20 nucleotides ABZR87_RS08025 and ABZR87_RS08030 overlap by 8 nucleotides
ABZR87_RS08010: ABZR87_RS08010 - pilin, at 1,702,570 to 1,703,073
_RS08010
ABZR87_RS08015: ABZR87_RS08015 - cyclic pyranopterin monophosphate synthase MoaC, at 1,703,137 to 1,703,613
_RS08015
ABZR87_RS08020: ABZR87_RS08020 - M48 family metalloprotease, at 1,703,719 to 1,705,422
_RS08020
ABZR87_RS08025: ABZR87_RS08025 - DUF2946 family protein, at 1,705,443 to 1,706,024
_RS08025
ABZR87_RS08030: ABZR87_RS08030 - alpha/beta fold hydrolase, at 1,706,017 to 1,707,093
_RS08030
Position (kb) 1703
1704
1705
1706 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1702.719 kb on - strand, within ABZR87_RS08010 at 1702.761 kb on + strand, within ABZR87_RS08010 at 1702.840 kb on - strand, within ABZR87_RS08010 at 1702.867 kb on + strand, within ABZR87_RS08010 at 1702.868 kb on - strand, within ABZR87_RS08010 at 1702.881 kb on - strand, within ABZR87_RS08010 at 1702.899 kb on + strand, within ABZR87_RS08010 at 1702.899 kb on + strand, within ABZR87_RS08010 at 1702.899 kb on + strand, within ABZR87_RS08010 at 1702.899 kb on + strand, within ABZR87_RS08010 at 1702.900 kb on - strand, within ABZR87_RS08010 at 1702.900 kb on - strand, within ABZR87_RS08010 at 1702.927 kb on - strand, within ABZR87_RS08010 at 1702.937 kb on + strand, within ABZR87_RS08010 at 1702.938 kb on - strand, within ABZR87_RS08010 at 1702.938 kb on - strand, within ABZR87_RS08010 at 1702.938 kb on - strand, within ABZR87_RS08010 at 1702.956 kb on + strand, within ABZR87_RS08010 at 1702.956 kb on + strand, within ABZR87_RS08010 at 1702.956 kb on + strand, within ABZR87_RS08010 at 1703.029 kb on - strand at 1703.029 kb on - strand at 1703.046 kb on + strand at 1703.046 kb on + strand at 1703.047 kb on - strand at 1703.047 kb on - strand at 1703.050 kb on + strand at 1703.050 kb on + strand at 1703.050 kb on + strand at 1703.050 kb on + strand at 1703.050 kb on + strand at 1703.050 kb on + strand at 1703.050 kb on + strand at 1703.050 kb on + strand at 1703.051 kb on - strand at 1703.051 kb on - strand at 1703.088 kb on - strand at 1703.138 kb on + strand at 1703.179 kb on + strand at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.234 kb on + strand, within ABZR87_RS08015 at 1703.235 kb on - strand, within ABZR87_RS08015 at 1703.235 kb on - strand, within ABZR87_RS08015 at 1703.235 kb on - strand, within ABZR87_RS08015 at 1703.235 kb on - strand, within ABZR87_RS08015 at 1703.235 kb on - strand, within ABZR87_RS08015 at 1703.235 kb on - strand, within ABZR87_RS08015 at 1703.235 kb on - strand, within ABZR87_RS08015 at 1703.311 kb on + strand, within ABZR87_RS08015 at 1703.311 kb on + strand, within ABZR87_RS08015 at 1703.311 kb on + strand, within ABZR87_RS08015 at 1703.311 kb on + strand, within ABZR87_RS08015 at 1703.311 kb on + strand, within ABZR87_RS08015 at 1703.311 kb on + strand, within ABZR87_RS08015 at 1703.312 kb on - strand, within ABZR87_RS08015 at 1703.312 kb on - strand, within ABZR87_RS08015 at 1703.312 kb on - strand, within ABZR87_RS08015 at 1703.312 kb on - strand, within ABZR87_RS08015 at 1703.312 kb on - strand, within ABZR87_RS08015 at 1703.312 kb on - strand, within ABZR87_RS08015 at 1703.312 kb on - strand, within ABZR87_RS08015 at 1703.362 kb on + strand, within ABZR87_RS08015 at 1703.518 kb on - strand, within ABZR87_RS08015 at 1703.571 kb on + strand at 1703.571 kb on + strand at 1703.571 kb on + strand at 1703.572 kb on - strand at 1703.572 kb on - strand at 1703.572 kb on - strand at 1703.572 kb on - strand at 1703.572 kb on - strand at 1703.572 kb on - strand at 1703.654 kb on + strand at 1703.654 kb on + strand at 1703.655 kb on - strand at 1703.655 kb on - strand at 1703.655 kb on - strand at 1703.655 kb on - strand at 1703.655 kb on - strand at 1703.659 kb on + strand at 1703.659 kb on + strand at 1703.660 kb on - strand at 1703.660 kb on - strand at 1703.718 kb on + strand at 1703.719 kb on - strand at 1703.932 kb on + strand, within ABZR87_RS08020 at 1703.933 kb on - strand, within ABZR87_RS08020 at 1703.971 kb on + strand, within ABZR87_RS08020 at 1703.972 kb on - strand, within ABZR87_RS08020 at 1704.059 kb on + strand, within ABZR87_RS08020 at 1704.097 kb on - strand, within ABZR87_RS08020 at 1704.104 kb on - strand, within ABZR87_RS08020 at 1704.122 kb on - strand, within ABZR87_RS08020 at 1704.122 kb on - strand, within ABZR87_RS08020 at 1704.303 kb on - strand, within ABZR87_RS08020 at 1704.303 kb on - strand, within ABZR87_RS08020 at 1704.303 kb on - strand, within ABZR87_RS08020 at 1704.336 kb on + strand, within ABZR87_RS08020 at 1704.337 kb on - strand, within ABZR87_RS08020 at 1704.354 kb on + strand, within ABZR87_RS08020 at 1704.354 kb on + strand, within ABZR87_RS08020 at 1704.355 kb on - strand, within ABZR87_RS08020 at 1704.355 kb on - strand, within ABZR87_RS08020 at 1704.355 kb on - strand, within ABZR87_RS08020 at 1704.355 kb on - strand, within ABZR87_RS08020 at 1704.529 kb on - strand, within ABZR87_RS08020 at 1704.550 kb on + strand, within ABZR87_RS08020 at 1704.551 kb on - strand, within ABZR87_RS08020 at 1704.551 kb on - strand, within ABZR87_RS08020 at 1704.551 kb on - strand, within ABZR87_RS08020 at 1704.612 kb on + strand, within ABZR87_RS08020 at 1704.613 kb on - strand, within ABZR87_RS08020 at 1704.632 kb on - strand, within ABZR87_RS08020 at 1704.781 kb on + strand, within ABZR87_RS08020 at 1704.781 kb on + strand, within ABZR87_RS08020 at 1704.781 kb on + strand, within ABZR87_RS08020 at 1704.782 kb on - strand, within ABZR87_RS08020 at 1704.782 kb on - strand, within ABZR87_RS08020 at 1704.783 kb on + strand, within ABZR87_RS08020 at 1704.783 kb on + strand, within ABZR87_RS08020 at 1704.784 kb on - strand, within ABZR87_RS08020 at 1704.784 kb on - strand, within ABZR87_RS08020 at 1704.784 kb on - strand, within ABZR87_RS08020 at 1704.863 kb on - strand, within ABZR87_RS08020 at 1704.940 kb on + strand, within ABZR87_RS08020 at 1705.014 kb on + strand, within ABZR87_RS08020 at 1705.093 kb on + strand, within ABZR87_RS08020 at 1705.093 kb on + strand, within ABZR87_RS08020 at 1705.093 kb on + strand, within ABZR87_RS08020 at 1705.093 kb on + strand, within ABZR87_RS08020 at 1705.093 kb on + strand, within ABZR87_RS08020 at 1705.094 kb on - strand, within ABZR87_RS08020 at 1705.094 kb on - strand, within ABZR87_RS08020 at 1705.094 kb on - strand, within ABZR87_RS08020 at 1705.094 kb on - strand, within ABZR87_RS08020 at 1705.094 kb on - strand, within ABZR87_RS08020 at 1705.142 kb on - strand, within ABZR87_RS08020 at 1705.142 kb on - strand, within ABZR87_RS08020 at 1705.208 kb on - strand, within ABZR87_RS08020 at 1705.331 kb on + strand at 1705.333 kb on + strand at 1705.333 kb on + strand at 1705.420 kb on + strand at 1705.421 kb on - strand at 1705.435 kb on + strand at 1705.436 kb on - strand at 1705.639 kb on + strand, within ABZR87_RS08025 at 1705.651 kb on + strand, within ABZR87_RS08025 at 1705.777 kb on + strand, within ABZR87_RS08025 at 1705.778 kb on - strand, within ABZR87_RS08025 at 1705.846 kb on + strand, within ABZR87_RS08025 at 1705.846 kb on - strand, within ABZR87_RS08025 at 1705.847 kb on - strand, within ABZR87_RS08025 at 1705.847 kb on - strand, within ABZR87_RS08025 at 1705.918 kb on + strand, within ABZR87_RS08025 at 1705.918 kb on + strand, within ABZR87_RS08025 at 1705.919 kb on - strand, within ABZR87_RS08025 at 1706.056 kb on + strand at 1706.056 kb on + strand at 1706.056 kb on + strand at 1706.056 kb on + strand at 1706.056 kb on + strand at 1706.056 kb on + strand at 1706.056 kb on + strand at 1706.056 kb on + strand at 1706.057 kb on - strand at 1706.057 kb on - strand at 1706.057 kb on - strand at 1706.057 kb on - strand at 1706.057 kb on - strand at 1706.297 kb on + strand, within ABZR87_RS08030 at 1706.298 kb on - strand, within ABZR87_RS08030 at 1706.390 kb on + strand, within ABZR87_RS08030 at 1706.391 kb on - strand, within ABZR87_RS08030 at 1706.391 kb on - strand, within ABZR87_RS08030 at 1706.391 kb on - strand, within ABZR87_RS08030
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 1,702,719 - ABZR87_RS08010 0.30 -0.2 1,702,761 + ABZR87_RS08010 0.38 -0.7 1,702,840 - ABZR87_RS08010 0.54 +1.2 1,702,867 + ABZR87_RS08010 0.59 -0.0 1,702,868 - ABZR87_RS08010 0.59 +0.6 1,702,881 - ABZR87_RS08010 0.62 +1.1 1,702,899 + ABZR87_RS08010 0.65 -0.0 1,702,899 + ABZR87_RS08010 0.65 -0.6 1,702,899 + ABZR87_RS08010 0.65 +0.7 1,702,899 + ABZR87_RS08010 0.65 -0.3 1,702,900 - ABZR87_RS08010 0.65 +0.7 1,702,900 - ABZR87_RS08010 0.65 +0.6 1,702,927 - ABZR87_RS08010 0.71 -0.7 1,702,937 + ABZR87_RS08010 0.73 -1.1 1,702,938 - ABZR87_RS08010 0.73 +0.0 1,702,938 - ABZR87_RS08010 0.73 +0.4 1,702,938 - ABZR87_RS08010 0.73 +0.9 1,702,956 + ABZR87_RS08010 0.77 -0.3 1,702,956 + ABZR87_RS08010 0.77 -1.6 1,702,956 + ABZR87_RS08010 0.77 -2.1 1,703,029 - -0.9 1,703,029 - +2.7 1,703,046 + -0.8 1,703,046 + +1.6 1,703,047 - -0.2 1,703,047 - -0.3 1,703,050 + +1.0 1,703,050 + -0.2 1,703,050 + -2.6 1,703,050 + +0.4 1,703,050 + +0.0 1,703,050 + -1.6 1,703,050 + -1.4 1,703,050 + -0.6 1,703,051 - -1.0 1,703,051 - +0.0 1,703,088 - -1.7 1,703,138 + -0.3 1,703,179 + -0.4 1,703,234 + ABZR87_RS08015 0.20 -0.2 1,703,234 + ABZR87_RS08015 0.20 -0.6 1,703,234 + ABZR87_RS08015 0.20 -2.5 1,703,234 + ABZR87_RS08015 0.20 -0.2 1,703,234 + ABZR87_RS08015 0.20 +0.0 1,703,234 + ABZR87_RS08015 0.20 -1.0 1,703,234 + ABZR87_RS08015 0.20 -0.1 1,703,234 + ABZR87_RS08015 0.20 -0.9 1,703,235 - ABZR87_RS08015 0.21 +0.3 1,703,235 - ABZR87_RS08015 0.21 -0.4 1,703,235 - ABZR87_RS08015 0.21 -0.6 1,703,235 - ABZR87_RS08015 0.21 +0.3 1,703,235 - ABZR87_RS08015 0.21 -1.8 1,703,235 - ABZR87_RS08015 0.21 +1.0 1,703,235 - ABZR87_RS08015 0.21 -1.5 1,703,311 + ABZR87_RS08015 0.36 +0.6 1,703,311 + ABZR87_RS08015 0.36 -1.9 1,703,311 + ABZR87_RS08015 0.36 -0.4 1,703,311 + ABZR87_RS08015 0.36 -0.2 1,703,311 + ABZR87_RS08015 0.36 -0.7 1,703,311 + ABZR87_RS08015 0.36 -1.4 1,703,312 - ABZR87_RS08015 0.37 +2.5 1,703,312 - ABZR87_RS08015 0.37 -1.4 1,703,312 - ABZR87_RS08015 0.37 -1.3 1,703,312 - ABZR87_RS08015 0.37 -1.9 1,703,312 - ABZR87_RS08015 0.37 -0.9 1,703,312 - ABZR87_RS08015 0.37 +0.7 1,703,312 - ABZR87_RS08015 0.37 -0.7 1,703,362 + ABZR87_RS08015 0.47 -1.1 1,703,518 - ABZR87_RS08015 0.80 -0.7 1,703,571 + -1.3 1,703,571 + -0.3 1,703,571 + +0.3 1,703,572 - -0.6 1,703,572 - -1.9 1,703,572 - -0.7 1,703,572 - -0.4 1,703,572 - -0.8 1,703,572 - -0.1 1,703,654 + +0.0 1,703,654 + -0.1 1,703,655 - -0.3 1,703,655 - -2.4 1,703,655 - +0.9 1,703,655 - -0.9 1,703,655 - +0.4 1,703,659 + -1.0 1,703,659 + +1.9 1,703,660 - +0.5 1,703,660 - +0.1 1,703,718 + +0.5 1,703,719 - +0.8 1,703,932 + ABZR87_RS08020 0.12 -0.6 1,703,933 - ABZR87_RS08020 0.13 -0.8 1,703,971 + ABZR87_RS08020 0.15 -0.4 1,703,972 - ABZR87_RS08020 0.15 -0.9 1,704,059 + ABZR87_RS08020 0.20 +0.0 1,704,097 - ABZR87_RS08020 0.22 -1.0 1,704,104 - ABZR87_RS08020 0.23 -0.9 1,704,122 - ABZR87_RS08020 0.24 -1.6 1,704,122 - ABZR87_RS08020 0.24 -0.9 1,704,303 - ABZR87_RS08020 0.34 -0.8 1,704,303 - ABZR87_RS08020 0.34 -2.2 1,704,303 - ABZR87_RS08020 0.34 -0.6 1,704,336 + ABZR87_RS08020 0.36 +0.7 1,704,337 - ABZR87_RS08020 0.36 +2.2 1,704,354 + ABZR87_RS08020 0.37 -0.4 1,704,354 + ABZR87_RS08020 0.37 +0.2 1,704,355 - ABZR87_RS08020 0.37 +0.6 1,704,355 - ABZR87_RS08020 0.37 +0.7 1,704,355 - ABZR87_RS08020 0.37 -0.1 1,704,355 - ABZR87_RS08020 0.37 +0.1 1,704,529 - ABZR87_RS08020 0.48 +0.7 1,704,550 + ABZR87_RS08020 0.49 -0.8 1,704,551 - ABZR87_RS08020 0.49 -1.5 1,704,551 - ABZR87_RS08020 0.49 -0.6 1,704,551 - ABZR87_RS08020 0.49 +0.4 1,704,612 + ABZR87_RS08020 0.52 -1.7 1,704,613 - ABZR87_RS08020 0.52 +0.5 1,704,632 - ABZR87_RS08020 0.54 -1.2 1,704,781 + ABZR87_RS08020 0.62 +0.5 1,704,781 + ABZR87_RS08020 0.62 -1.3 1,704,781 + ABZR87_RS08020 0.62 +1.6 1,704,782 - ABZR87_RS08020 0.62 +0.1 1,704,782 - ABZR87_RS08020 0.62 -0.5 1,704,783 + ABZR87_RS08020 0.62 -0.4 1,704,783 + ABZR87_RS08020 0.62 -0.4 1,704,784 - ABZR87_RS08020 0.62 +1.3 1,704,784 - ABZR87_RS08020 0.62 -1.0 1,704,784 - ABZR87_RS08020 0.62 +0.1 1,704,863 - ABZR87_RS08020 0.67 -0.5 1,704,940 + ABZR87_RS08020 0.72 -0.2 1,705,014 + ABZR87_RS08020 0.76 +0.4 1,705,093 + ABZR87_RS08020 0.81 +0.5 1,705,093 + ABZR87_RS08020 0.81 -0.0 1,705,093 + ABZR87_RS08020 0.81 -0.2 1,705,093 + ABZR87_RS08020 0.81 -1.1 1,705,093 + ABZR87_RS08020 0.81 -0.9 1,705,094 - ABZR87_RS08020 0.81 -1.5 1,705,094 - ABZR87_RS08020 0.81 +0.7 1,705,094 - ABZR87_RS08020 0.81 +0.3 1,705,094 - ABZR87_RS08020 0.81 -0.2 1,705,094 - ABZR87_RS08020 0.81 -0.2 1,705,142 - ABZR87_RS08020 0.84 -0.3 1,705,142 - ABZR87_RS08020 0.84 +0.3 1,705,208 - ABZR87_RS08020 0.87 +0.1 1,705,331 + +0.7 1,705,333 + -2.1 1,705,333 + -0.0 1,705,420 + +0.8 1,705,421 - +0.2 1,705,435 + -0.2 1,705,436 - +1.0 1,705,639 + ABZR87_RS08025 0.34 -0.7 1,705,651 + ABZR87_RS08025 0.36 +0.0 1,705,777 + ABZR87_RS08025 0.57 -1.5 1,705,778 - ABZR87_RS08025 0.58 -0.5 1,705,846 + ABZR87_RS08025 0.69 -1.6 1,705,846 - ABZR87_RS08025 0.69 -1.7 1,705,847 - ABZR87_RS08025 0.69 +2.0 1,705,847 - ABZR87_RS08025 0.69 -1.2 1,705,918 + ABZR87_RS08025 0.82 -0.4 1,705,918 + ABZR87_RS08025 0.82 +1.2 1,705,919 - ABZR87_RS08025 0.82 -1.7 1,706,056 + -0.8 1,706,056 + +0.5 1,706,056 + -0.6 1,706,056 + +0.0 1,706,056 + -0.1 1,706,056 + +0.3 1,706,056 + +0.2 1,706,056 + -0.1 1,706,057 - +0.8 1,706,057 - +0.9 1,706,057 - -0.7 1,706,057 - -0.3 1,706,057 - -2.3 1,706,297 + ABZR87_RS08030 0.26 +1.0 1,706,298 - ABZR87_RS08030 0.26 +0.7 1,706,390 + ABZR87_RS08030 0.35 -0.5 1,706,391 - ABZR87_RS08030 0.35 -0.8 1,706,391 - ABZR87_RS08030 0.35 +0.8 1,706,391 - ABZR87_RS08030 0.35 -0.5
Or see this region's nucleotide sequence