Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07595 and ABZR87_RS07600 are separated by 175 nucleotides ABZR87_RS07600 and ABZR87_RS07605 overlap by 4 nucleotides ABZR87_RS07605 and ABZR87_RS07610 are separated by 19 nucleotides
ABZR87_RS07595: ABZR87_RS07595 - anhydro-N-acetylmuramic acid kinase, at 1,609,942 to 1,611,096
_RS07595
ABZR87_RS07600: ABZR87_RS07600 - tyrosine--tRNA ligase, at 1,611,272 to 1,612,537
_RS07600
ABZR87_RS07605: ABZR87_RS07605 - D-aminoacyl-tRNA deacylase, at 1,612,534 to 1,613,046
_RS07605
ABZR87_RS07610: ABZR87_RS07610 - histidine phosphatase family protein, at 1,613,066 to 1,613,746
_RS07610
Position (kb) 1611
1612
1613 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1610.451 kb on + strand, within ABZR87_RS07595 at 1610.451 kb on + strand, within ABZR87_RS07595 at 1610.452 kb on - strand, within ABZR87_RS07595 at 1610.452 kb on - strand, within ABZR87_RS07595 at 1610.462 kb on + strand, within ABZR87_RS07595 at 1610.462 kb on + strand, within ABZR87_RS07595 at 1610.462 kb on + strand, within ABZR87_RS07595 at 1610.463 kb on - strand, within ABZR87_RS07595 at 1610.735 kb on + strand, within ABZR87_RS07595 at 1610.736 kb on - strand, within ABZR87_RS07595 at 1610.855 kb on + strand, within ABZR87_RS07595 at 1610.963 kb on + strand, within ABZR87_RS07595 at 1610.963 kb on + strand, within ABZR87_RS07595 at 1610.964 kb on - strand, within ABZR87_RS07595 at 1610.964 kb on - strand, within ABZR87_RS07595 at 1610.964 kb on - strand, within ABZR87_RS07595 at 1611.056 kb on + strand at 1611.057 kb on - strand at 1611.057 kb on - strand at 1611.108 kb on + strand at 1611.108 kb on + strand at 1611.109 kb on - strand at 1611.109 kb on - strand at 1611.109 kb on - strand at 1612.687 kb on + strand, within ABZR87_RS07605 at 1612.687 kb on + strand, within ABZR87_RS07605 at 1612.687 kb on + strand, within ABZR87_RS07605 at 1612.865 kb on - strand, within ABZR87_RS07605 at 1612.865 kb on - strand, within ABZR87_RS07605 at 1613.258 kb on + strand, within ABZR87_RS07610 at 1613.258 kb on + strand, within ABZR87_RS07610 at 1613.259 kb on - strand, within ABZR87_RS07610 at 1613.259 kb on - strand, within ABZR87_RS07610 at 1613.357 kb on + strand, within ABZR87_RS07610 at 1613.357 kb on + strand, within ABZR87_RS07610 at 1613.358 kb on - strand, within ABZR87_RS07610 at 1613.381 kb on + strand, within ABZR87_RS07610 at 1613.381 kb on + strand, within ABZR87_RS07610 at 1613.381 kb on + strand, within ABZR87_RS07610 at 1613.382 kb on - strand, within ABZR87_RS07610 at 1613.382 kb on - strand, within ABZR87_RS07610
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 1,610,451 + ABZR87_RS07595 0.44 +0.4 1,610,451 + ABZR87_RS07595 0.44 +0.2 1,610,452 - ABZR87_RS07595 0.44 +1.2 1,610,452 - ABZR87_RS07595 0.44 -0.1 1,610,462 + ABZR87_RS07595 0.45 -0.2 1,610,462 + ABZR87_RS07595 0.45 -0.3 1,610,462 + ABZR87_RS07595 0.45 +1.2 1,610,463 - ABZR87_RS07595 0.45 -0.5 1,610,735 + ABZR87_RS07595 0.69 +1.1 1,610,736 - ABZR87_RS07595 0.69 -0.1 1,610,855 + ABZR87_RS07595 0.79 +1.1 1,610,963 + ABZR87_RS07595 0.88 +0.4 1,610,963 + ABZR87_RS07595 0.88 -1.0 1,610,964 - ABZR87_RS07595 0.88 -0.5 1,610,964 - ABZR87_RS07595 0.88 -0.2 1,610,964 - ABZR87_RS07595 0.88 +0.5 1,611,056 + +1.3 1,611,057 - -1.0 1,611,057 - -0.3 1,611,108 + -2.3 1,611,108 + -0.5 1,611,109 - -0.0 1,611,109 - -1.5 1,611,109 - +0.0 1,612,687 + ABZR87_RS07605 0.30 -0.1 1,612,687 + ABZR87_RS07605 0.30 -1.2 1,612,687 + ABZR87_RS07605 0.30 +0.0 1,612,865 - ABZR87_RS07605 0.65 -0.6 1,612,865 - ABZR87_RS07605 0.65 -0.1 1,613,258 + ABZR87_RS07610 0.28 -0.4 1,613,258 + ABZR87_RS07610 0.28 -0.1 1,613,259 - ABZR87_RS07610 0.28 -1.3 1,613,259 - ABZR87_RS07610 0.28 -0.9 1,613,357 + ABZR87_RS07610 0.43 +0.1 1,613,357 + ABZR87_RS07610 0.43 +0.1 1,613,358 - ABZR87_RS07610 0.43 +0.2 1,613,381 + ABZR87_RS07610 0.46 +0.0 1,613,381 + ABZR87_RS07610 0.46 -0.6 1,613,381 + ABZR87_RS07610 0.46 -2.9 1,613,382 - ABZR87_RS07610 0.46 -0.4 1,613,382 - ABZR87_RS07610 0.46 -1.9
Or see this region's nucleotide sequence