Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS06980 and ABZR87_RS06985 are separated by 170 nucleotides ABZR87_RS06985 and ABZR87_RS06990 are separated by 152 nucleotides ABZR87_RS06990 and ABZR87_RS06995 are separated by 78 nucleotides ABZR87_RS06995 and ABZR87_RS07000 are separated by 50 nucleotides
ABZR87_RS06980: ABZR87_RS06980 - aminoacyl-tRNA hydrolase, at 1,475,127 to 1,475,729
_RS06980
ABZR87_RS06985: ABZR87_RS06985 - 50S ribosomal protein L25/general stress protein Ctc, at 1,475,900 to 1,476,526
_RS06985
ABZR87_RS06990: ABZR87_RS06990 - ribose-phosphate pyrophosphokinase, at 1,476,679 to 1,477,629
_RS06990
ABZR87_RS06995: ABZR87_RS06995 - tRNA-Gln, at 1,477,708 to 1,477,784
_RS06995
ABZR87_RS07000: ABZR87_RS07000 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,477,835 to 1,478,704
_RS07000
Position (kb)
1476
1477
1478 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1475.738 kb on + strand at 1475.738 kb on + strand at 1475.773 kb on + strand at 1475.774 kb on - strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.781 kb on + strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.782 kb on - strand at 1475.901 kb on + strand at 1475.902 kb on - strand at 1476.586 kb on - strand at 1476.660 kb on - strand at 1476.660 kb on - strand at 1476.680 kb on + strand at 1476.681 kb on - strand at 1476.681 kb on - strand at 1477.697 kb on - strand at 1477.697 kb on - strand at 1477.697 kb on - strand at 1477.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 1,475,738 + -0.4 1,475,738 + -0.0 1,475,773 + -1.3 1,475,774 - +2.4 1,475,781 + -0.7 1,475,781 + -0.5 1,475,781 + -0.5 1,475,781 + -0.3 1,475,781 + -0.3 1,475,781 + -0.1 1,475,781 + +1.2 1,475,781 + +0.3 1,475,782 - +0.8 1,475,782 - -1.0 1,475,782 - -0.0 1,475,782 - +0.3 1,475,782 - -0.3 1,475,901 + +0.4 1,475,902 - +1.3 1,476,586 - +1.2 1,476,660 - -0.9 1,476,660 - -0.3 1,476,680 + +0.0 1,476,681 - -0.3 1,476,681 - -2.5 1,477,697 - +2.2 1,477,697 - +1.6 1,477,697 - +0.1 1,477,697 - -1.0
Or see this region's nucleotide sequence