Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04445 and ABZR87_RS04450 are separated by 5 nucleotides ABZR87_RS04450 and ABZR87_RS04455 are separated by 169 nucleotides ABZR87_RS04455 and ABZR87_RS04460 are separated by 372 nucleotides ABZR87_RS04460 and ABZR87_RS04465 are separated by 48 nucleotides
ABZR87_RS04445: ABZR87_RS04445 - arsenate reductase ArsC, at 930,568 to 931,086
_RS04445
ABZR87_RS04450: ABZR87_RS04450 - MIP/aquaporin family protein, at 931,092 to 931,799
_RS04450
ABZR87_RS04455: ABZR87_RS04455 - alpha/beta hydrolase, at 931,969 to 932,877
_RS04455
ABZR87_RS04460: ABZR87_RS04460 - hypothetical protein, at 933,250 to 933,555
_RS04460
ABZR87_RS04465: ABZR87_RS04465 - hypothetical protein, at 933,604 to 933,933
_RS04465
Position (kb) 931
932
933 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 931.141 kb on + strand at 931.142 kb on - strand at 931.248 kb on + strand, within ABZR87_RS04450 at 931.248 kb on + strand, within ABZR87_RS04450 at 931.248 kb on + strand, within ABZR87_RS04450 at 931.249 kb on - strand, within ABZR87_RS04450 at 931.249 kb on - strand, within ABZR87_RS04450 at 931.249 kb on - strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.312 kb on + strand, within ABZR87_RS04450 at 931.313 kb on - strand, within ABZR87_RS04450 at 931.313 kb on - strand, within ABZR87_RS04450 at 931.313 kb on - strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.356 kb on + strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.357 kb on - strand, within ABZR87_RS04450 at 931.554 kb on + strand, within ABZR87_RS04450 at 931.554 kb on + strand, within ABZR87_RS04450 at 931.570 kb on - strand, within ABZR87_RS04450 at 931.797 kb on + strand at 931.798 kb on - strand at 931.858 kb on + strand at 931.858 kb on + strand at 931.858 kb on + strand at 931.859 kb on - strand at 931.861 kb on + strand at 931.861 kb on + strand at 931.862 kb on - strand at 931.862 kb on - strand at 931.862 kb on - strand at 931.862 kb on - strand at 931.894 kb on + strand at 931.894 kb on + strand at 931.895 kb on - strand at 931.901 kb on + strand at 931.901 kb on + strand at 931.901 kb on + strand at 931.901 kb on + strand at 931.902 kb on - strand at 931.902 kb on - strand at 932.042 kb on - strand at 932.197 kb on - strand, within ABZR87_RS04455 at 932.197 kb on - strand, within ABZR87_RS04455 at 932.197 kb on - strand, within ABZR87_RS04455 at 932.197 kb on - strand, within ABZR87_RS04455 at 932.254 kb on + strand, within ABZR87_RS04455 at 932.362 kb on + strand, within ABZR87_RS04455 at 932.363 kb on - strand, within ABZR87_RS04455 at 932.364 kb on - strand, within ABZR87_RS04455 at 932.403 kb on - strand, within ABZR87_RS04455 at 932.525 kb on - strand, within ABZR87_RS04455 at 932.525 kb on - strand, within ABZR87_RS04455 at 932.525 kb on - strand, within ABZR87_RS04455 at 932.525 kb on - strand, within ABZR87_RS04455 at 932.593 kb on + strand, within ABZR87_RS04455 at 932.594 kb on - strand, within ABZR87_RS04455 at 932.594 kb on - strand, within ABZR87_RS04455 at 932.605 kb on + strand, within ABZR87_RS04455 at 932.841 kb on + strand at 932.883 kb on + strand at 932.883 kb on + strand at 932.883 kb on + strand at 932.884 kb on - strand at 932.884 kb on - strand at 932.884 kb on - strand at 932.906 kb on + strand at 932.906 kb on + strand at 932.906 kb on + strand at 932.939 kb on + strand at 932.939 kb on + strand at 932.940 kb on - strand at 932.940 kb on - strand at 932.990 kb on + strand at 932.993 kb on + strand at 932.993 kb on + strand at 932.993 kb on + strand at 932.994 kb on - strand at 933.225 kb on + strand at 933.232 kb on + strand at 933.263 kb on + strand at 933.264 kb on - strand at 933.302 kb on + strand, within ABZR87_RS04460 at 933.302 kb on + strand, within ABZR87_RS04460 at 933.302 kb on + strand, within ABZR87_RS04460 at 933.303 kb on - strand, within ABZR87_RS04460 at 933.314 kb on - strand, within ABZR87_RS04460 at 933.314 kb on - strand, within ABZR87_RS04460 at 933.360 kb on + strand, within ABZR87_RS04460 at 933.360 kb on + strand, within ABZR87_RS04460 at 933.360 kb on + strand, within ABZR87_RS04460 at 933.379 kb on + strand, within ABZR87_RS04460 at 933.407 kb on - strand, within ABZR87_RS04460 at 933.450 kb on + strand, within ABZR87_RS04460 at 933.450 kb on + strand, within ABZR87_RS04460 at 933.451 kb on - strand, within ABZR87_RS04460 at 933.464 kb on + strand, within ABZR87_RS04460 at 933.464 kb on + strand, within ABZR87_RS04460 at 933.464 kb on + strand, within ABZR87_RS04460 at 933.464 kb on + strand, within ABZR87_RS04460 at 933.495 kb on + strand, within ABZR87_RS04460 at 933.495 kb on + strand, within ABZR87_RS04460 at 933.496 kb on - strand, within ABZR87_RS04460 at 933.496 kb on - strand, within ABZR87_RS04460 at 933.503 kb on + strand, within ABZR87_RS04460 at 933.503 kb on + strand, within ABZR87_RS04460 at 933.503 kb on + strand, within ABZR87_RS04460 at 933.503 kb on + strand, within ABZR87_RS04460 at 933.504 kb on - strand, within ABZR87_RS04460 at 933.537 kb on + strand at 933.537 kb on + strand at 933.537 kb on + strand at 933.537 kb on + strand at 933.538 kb on - strand at 933.538 kb on - strand at 933.538 kb on - strand at 933.538 kb on - strand at 933.559 kb on + strand at 933.560 kb on - strand at 933.560 kb on - strand at 933.736 kb on + strand, within ABZR87_RS04465 at 933.736 kb on + strand, within ABZR87_RS04465 at 933.737 kb on - strand, within ABZR87_RS04465 at 933.737 kb on - strand, within ABZR87_RS04465 at 933.737 kb on - strand, within ABZR87_RS04465 at 933.737 kb on - strand, within ABZR87_RS04465 at 933.816 kb on + strand, within ABZR87_RS04465
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 931,141 + +0.5 931,142 - +0.9 931,248 + ABZR87_RS04450 0.22 -0.1 931,248 + ABZR87_RS04450 0.22 -0.3 931,248 + ABZR87_RS04450 0.22 -1.2 931,249 - ABZR87_RS04450 0.22 +0.0 931,249 - ABZR87_RS04450 0.22 +0.1 931,249 - ABZR87_RS04450 0.22 -0.1 931,312 + ABZR87_RS04450 0.31 +0.2 931,312 + ABZR87_RS04450 0.31 -0.6 931,312 + ABZR87_RS04450 0.31 +0.4 931,312 + ABZR87_RS04450 0.31 -0.7 931,313 - ABZR87_RS04450 0.31 +0.6 931,313 - ABZR87_RS04450 0.31 -1.3 931,313 - ABZR87_RS04450 0.31 -0.5 931,356 + ABZR87_RS04450 0.37 -0.1 931,356 + ABZR87_RS04450 0.37 -0.8 931,356 + ABZR87_RS04450 0.37 +0.5 931,356 + ABZR87_RS04450 0.37 +0.5 931,357 - ABZR87_RS04450 0.37 +2.9 931,357 - ABZR87_RS04450 0.37 +1.5 931,357 - ABZR87_RS04450 0.37 +0.3 931,357 - ABZR87_RS04450 0.37 +0.1 931,554 + ABZR87_RS04450 0.65 +0.9 931,554 + ABZR87_RS04450 0.65 -0.4 931,570 - ABZR87_RS04450 0.68 -0.3 931,797 + -0.3 931,798 - -1.0 931,858 + -0.5 931,858 + -1.3 931,858 + +0.6 931,859 - -0.3 931,861 + -0.3 931,861 + -0.2 931,862 - -1.5 931,862 - -0.4 931,862 - -1.2 931,862 - -0.6 931,894 + -0.9 931,894 + -0.2 931,895 - -1.7 931,901 + -1.0 931,901 + -1.3 931,901 + +1.0 931,901 + -0.5 931,902 - -1.5 931,902 - -0.8 932,042 - +0.5 932,197 - ABZR87_RS04455 0.25 +0.5 932,197 - ABZR87_RS04455 0.25 -0.6 932,197 - ABZR87_RS04455 0.25 +0.4 932,197 - ABZR87_RS04455 0.25 +0.1 932,254 + ABZR87_RS04455 0.31 -1.3 932,362 + ABZR87_RS04455 0.43 -0.2 932,363 - ABZR87_RS04455 0.43 -1.3 932,364 - ABZR87_RS04455 0.43 -1.3 932,403 - ABZR87_RS04455 0.48 -1.6 932,525 - ABZR87_RS04455 0.61 -2.1 932,525 - ABZR87_RS04455 0.61 +0.3 932,525 - ABZR87_RS04455 0.61 -0.3 932,525 - ABZR87_RS04455 0.61 -2.0 932,593 + ABZR87_RS04455 0.69 -0.1 932,594 - ABZR87_RS04455 0.69 -0.4 932,594 - ABZR87_RS04455 0.69 +0.0 932,605 + ABZR87_RS04455 0.70 -1.0 932,841 + +0.3 932,883 + -0.7 932,883 + -0.4 932,883 + +1.9 932,884 - -0.1 932,884 - +0.6 932,884 - -0.2 932,906 + +0.6 932,906 + -0.1 932,906 + -0.1 932,939 + +0.6 932,939 + +2.0 932,940 - +1.1 932,940 - +0.5 932,990 + +0.6 932,993 + -0.9 932,993 + +0.7 932,993 + -0.3 932,994 - -0.6 933,225 + -0.2 933,232 + +0.3 933,263 + +0.8 933,264 - -1.3 933,302 + ABZR87_RS04460 0.17 +0.6 933,302 + ABZR87_RS04460 0.17 +0.6 933,302 + ABZR87_RS04460 0.17 +0.7 933,303 - ABZR87_RS04460 0.17 +1.9 933,314 - ABZR87_RS04460 0.21 -0.1 933,314 - ABZR87_RS04460 0.21 +0.2 933,360 + ABZR87_RS04460 0.36 -0.1 933,360 + ABZR87_RS04460 0.36 +0.2 933,360 + ABZR87_RS04460 0.36 +0.3 933,379 + ABZR87_RS04460 0.42 -0.4 933,407 - ABZR87_RS04460 0.51 +0.0 933,450 + ABZR87_RS04460 0.65 +0.4 933,450 + ABZR87_RS04460 0.65 +0.5 933,451 - ABZR87_RS04460 0.66 -0.2 933,464 + ABZR87_RS04460 0.70 +0.3 933,464 + ABZR87_RS04460 0.70 -0.1 933,464 + ABZR87_RS04460 0.70 +0.6 933,464 + ABZR87_RS04460 0.70 -0.6 933,495 + ABZR87_RS04460 0.80 -1.4 933,495 + ABZR87_RS04460 0.80 +1.5 933,496 - ABZR87_RS04460 0.80 -0.1 933,496 - ABZR87_RS04460 0.80 -1.6 933,503 + ABZR87_RS04460 0.83 +0.6 933,503 + ABZR87_RS04460 0.83 -0.2 933,503 + ABZR87_RS04460 0.83 +0.2 933,503 + ABZR87_RS04460 0.83 +1.2 933,504 - ABZR87_RS04460 0.83 -0.3 933,537 + +0.2 933,537 + +2.2 933,537 + +0.2 933,537 + +3.9 933,538 - +0.6 933,538 - +1.7 933,538 - -0.1 933,538 - -0.7 933,559 + +1.0 933,560 - +0.6 933,560 - +0.1 933,736 + ABZR87_RS04465 0.40 +0.1 933,736 + ABZR87_RS04465 0.40 +0.1 933,737 - ABZR87_RS04465 0.40 +0.6 933,737 - ABZR87_RS04465 0.40 +1.0 933,737 - ABZR87_RS04465 0.40 +0.7 933,737 - ABZR87_RS04465 0.40 +1.1 933,816 + ABZR87_RS04465 0.64 -0.4
Or see this region's nucleotide sequence