Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04350 and ABZR87_RS04355 are separated by 143 nucleotides ABZR87_RS04355 and ABZR87_RS04360 are separated by 60 nucleotides
ABZR87_RS04350: ABZR87_RS04350 - citrate synthase family protein, at 907,075 to 908,307
_RS04350
ABZR87_RS04355: ABZR87_RS04355 - CoA transferase, at 908,451 to 909,848
_RS04355
ABZR87_RS04360: ABZR87_RS04360 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 909,909 to 910,766
_RS04360
Position (kb) 908
909
910 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.766 kb on - strand, within ABZR87_RS04350 at 907.766 kb on - strand, within ABZR87_RS04350 at 907.866 kb on + strand, within ABZR87_RS04350 at 907.867 kb on - strand, within ABZR87_RS04350 at 907.867 kb on - strand, within ABZR87_RS04350 at 907.914 kb on - strand, within ABZR87_RS04350 at 908.039 kb on + strand, within ABZR87_RS04350 at 908.040 kb on - strand, within ABZR87_RS04350 at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.237 kb on + strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.238 kb on - strand at 908.243 kb on + strand at 908.243 kb on + strand at 908.243 kb on + strand at 908.243 kb on + strand at 908.244 kb on - strand at 908.244 kb on - strand at 908.244 kb on - strand at 908.297 kb on + strand at 908.348 kb on + strand at 908.383 kb on + strand at 908.383 kb on + strand at 908.384 kb on - strand at 908.384 kb on - strand at 908.766 kb on + strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.767 kb on - strand, within ABZR87_RS04355 at 908.853 kb on + strand, within ABZR87_RS04355 at 908.853 kb on + strand, within ABZR87_RS04355 at 908.854 kb on - strand, within ABZR87_RS04355 at 908.854 kb on - strand, within ABZR87_RS04355 at 908.854 kb on - strand, within ABZR87_RS04355 at 909.300 kb on - strand, within ABZR87_RS04355 at 909.300 kb on - strand, within ABZR87_RS04355 at 909.300 kb on - strand, within ABZR87_RS04355 at 909.387 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.405 kb on + strand, within ABZR87_RS04355 at 909.406 kb on - strand, within ABZR87_RS04355 at 909.411 kb on + strand, within ABZR87_RS04355 at 909.411 kb on + strand, within ABZR87_RS04355 at 909.703 kb on - strand, within ABZR87_RS04355 at 909.703 kb on - strand, within ABZR87_RS04355 at 909.703 kb on - strand, within ABZR87_RS04355 at 909.720 kb on + strand at 909.721 kb on - strand at 909.846 kb on + strand at 909.846 kb on + strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.847 kb on - strand at 909.859 kb on + strand at 909.885 kb on - strand at 909.885 kb on - strand at 909.885 kb on - strand at 909.918 kb on + strand at 909.918 kb on + strand at 909.918 kb on + strand at 909.990 kb on + strand at 909.991 kb on - strand at 910.020 kb on + strand, within ABZR87_RS04360 at 910.020 kb on + strand, within ABZR87_RS04360 at 910.020 kb on + strand, within ABZR87_RS04360 at 910.021 kb on - strand, within ABZR87_RS04360 at 910.021 kb on - strand, within ABZR87_RS04360 at 910.021 kb on - strand, within ABZR87_RS04360 at 910.050 kb on + strand, within ABZR87_RS04360 at 910.050 kb on + strand, within ABZR87_RS04360 at 910.161 kb on + strand, within ABZR87_RS04360 at 910.161 kb on + strand, within ABZR87_RS04360 at 910.210 kb on - strand, within ABZR87_RS04360 at 910.342 kb on - strand, within ABZR87_RS04360 at 910.342 kb on - strand, within ABZR87_RS04360 at 910.441 kb on - strand, within ABZR87_RS04360 at 910.441 kb on - strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.497 kb on + strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.498 kb on - strand, within ABZR87_RS04360 at 910.819 kb on + strand at 910.819 kb on + strand at 910.819 kb on + strand at 910.819 kb on + strand at 910.820 kb on - strand at 910.820 kb on - strand at 910.820 kb on - strand at 910.820 kb on - strand at 910.823 kb on + strand at 910.824 kb on - strand at 910.824 kb on - strand at 910.833 kb on + strand at 910.834 kb on - strand at 910.834 kb on - strand at 910.834 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 907,766 - ABZR87_RS04350 0.56 -0.5 907,766 - ABZR87_RS04350 0.56 +0.4 907,866 + ABZR87_RS04350 0.64 -0.4 907,867 - ABZR87_RS04350 0.64 +1.4 907,867 - ABZR87_RS04350 0.64 +0.9 907,914 - ABZR87_RS04350 0.68 +2.4 908,039 + ABZR87_RS04350 0.78 -0.1 908,040 - ABZR87_RS04350 0.78 +0.4 908,237 + +1.5 908,237 + +1.3 908,237 + -1.2 908,237 + -1.3 908,237 + -0.4 908,237 + -1.0 908,237 + +0.8 908,238 - -0.6 908,238 - -0.4 908,238 - -0.5 908,238 - +1.6 908,238 - +0.5 908,243 + -0.3 908,243 + +1.7 908,243 + -1.4 908,243 + +0.3 908,244 - +0.6 908,244 - +0.8 908,244 - +1.0 908,297 + -0.2 908,348 + -0.3 908,383 + -0.6 908,383 + -1.1 908,384 - -2.2 908,384 - -0.9 908,766 + ABZR87_RS04355 0.23 -0.6 908,767 - ABZR87_RS04355 0.23 -1.0 908,767 - ABZR87_RS04355 0.23 -0.4 908,767 - ABZR87_RS04355 0.23 +0.3 908,767 - ABZR87_RS04355 0.23 +1.1 908,767 - ABZR87_RS04355 0.23 -0.4 908,853 + ABZR87_RS04355 0.29 -0.1 908,853 + ABZR87_RS04355 0.29 -0.8 908,854 - ABZR87_RS04355 0.29 -0.1 908,854 - ABZR87_RS04355 0.29 +0.1 908,854 - ABZR87_RS04355 0.29 +2.2 909,300 - ABZR87_RS04355 0.61 +0.6 909,300 - ABZR87_RS04355 0.61 +0.2 909,300 - ABZR87_RS04355 0.61 +1.1 909,387 + ABZR87_RS04355 0.67 -0.4 909,405 + ABZR87_RS04355 0.68 -0.1 909,405 + ABZR87_RS04355 0.68 +0.4 909,405 + ABZR87_RS04355 0.68 +0.7 909,405 + ABZR87_RS04355 0.68 -0.1 909,406 - ABZR87_RS04355 0.68 -0.2 909,411 + ABZR87_RS04355 0.69 -1.1 909,411 + ABZR87_RS04355 0.69 -1.4 909,703 - ABZR87_RS04355 0.90 +0.1 909,703 - ABZR87_RS04355 0.90 +0.0 909,703 - ABZR87_RS04355 0.90 -0.9 909,720 + -0.0 909,721 - -3.5 909,846 + -1.1 909,846 + -0.7 909,847 - +0.4 909,847 - +1.2 909,847 - -1.4 909,847 - -0.2 909,847 - +0.3 909,859 + +0.4 909,885 - +0.6 909,885 - -0.3 909,885 - +0.5 909,918 + -0.9 909,918 + +0.0 909,918 + -0.3 909,990 + -0.8 909,991 - +2.4 910,020 + ABZR87_RS04360 0.13 +0.7 910,020 + ABZR87_RS04360 0.13 +0.5 910,020 + ABZR87_RS04360 0.13 -0.3 910,021 - ABZR87_RS04360 0.13 -1.7 910,021 - ABZR87_RS04360 0.13 -0.1 910,021 - ABZR87_RS04360 0.13 -1.3 910,050 + ABZR87_RS04360 0.16 -1.5 910,050 + ABZR87_RS04360 0.16 -1.4 910,161 + ABZR87_RS04360 0.29 +0.1 910,161 + ABZR87_RS04360 0.29 +0.5 910,210 - ABZR87_RS04360 0.35 +0.7 910,342 - ABZR87_RS04360 0.50 -1.5 910,342 - ABZR87_RS04360 0.50 -0.8 910,441 - ABZR87_RS04360 0.62 +0.4 910,441 - ABZR87_RS04360 0.62 +0.3 910,497 + ABZR87_RS04360 0.69 -0.4 910,497 + ABZR87_RS04360 0.69 -0.9 910,497 + ABZR87_RS04360 0.69 -0.2 910,497 + ABZR87_RS04360 0.69 -0.2 910,497 + ABZR87_RS04360 0.69 -1.7 910,497 + ABZR87_RS04360 0.69 +0.2 910,497 + ABZR87_RS04360 0.69 +0.3 910,497 + ABZR87_RS04360 0.69 -0.3 910,498 - ABZR87_RS04360 0.69 +1.2 910,498 - ABZR87_RS04360 0.69 -1.3 910,498 - ABZR87_RS04360 0.69 +1.0 910,498 - ABZR87_RS04360 0.69 +0.5 910,498 - ABZR87_RS04360 0.69 +0.5 910,498 - ABZR87_RS04360 0.69 -0.1 910,498 - ABZR87_RS04360 0.69 -0.3 910,819 + -0.3 910,819 + +0.1 910,819 + -0.1 910,819 + -0.1 910,820 - +0.7 910,820 - -1.1 910,820 - -1.0 910,820 - -0.2 910,823 + -0.1 910,824 - -0.7 910,824 - -0.1 910,833 + -0.1 910,834 - +1.4 910,834 - +1.6 910,834 - +0.1
Or see this region's nucleotide sequence