Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04140 and ABZR87_RS04145 are separated by 155 nucleotides ABZR87_RS04145 and ABZR87_RS04150 are separated by 107 nucleotides ABZR87_RS04150 and ABZR87_RS04155 are separated by 5 nucleotides ABZR87_RS04155 and ABZR87_RS04160 are separated by 12 nucleotides
ABZR87_RS04140: ABZR87_RS04140 - ABC transporter substrate-binding protein, at 868,415 to 869,563
_RS04140
ABZR87_RS04145: ABZR87_RS04145 - short chain dehydrogenase, at 869,719 to 870,324
_RS04145
ABZR87_RS04150: ABZR87_RS04150 - LysR family transcriptional regulator CrgA, at 870,432 to 871,340
_RS04150
ABZR87_RS04155: ABZR87_RS04155 - DUF3820 family protein, at 871,346 to 871,561
_RS04155
ABZR87_RS04160: ABZR87_RS04160 - LysR family transcriptional regulator, at 871,574 to 872,470
_RS04160
Position (kb) 870
871
872 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 869.555 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.578 kb on + strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.579 kb on - strand at 869.648 kb on + strand at 869.648 kb on + strand at 869.648 kb on + strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.649 kb on - strand at 869.683 kb on - strand at 869.732 kb on + strand at 869.732 kb on + strand at 869.732 kb on + strand at 869.733 kb on - strand at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.828 kb on + strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 869.829 kb on - strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.020 kb on + strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.021 kb on - strand, within ABZR87_RS04145 at 870.252 kb on + strand, within ABZR87_RS04145 at 870.253 kb on - strand, within ABZR87_RS04145 at 870.253 kb on - strand, within ABZR87_RS04145 at 870.362 kb on - strand at 870.388 kb on - strand at 870.398 kb on + strand at 870.399 kb on - strand at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.537 kb on + strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.538 kb on - strand, within ABZR87_RS04150 at 870.627 kb on + strand, within ABZR87_RS04150 at 870.627 kb on + strand, within ABZR87_RS04150 at 870.627 kb on + strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.628 kb on - strand, within ABZR87_RS04150 at 870.912 kb on + strand, within ABZR87_RS04150 at 870.912 kb on + strand, within ABZR87_RS04150 at 870.942 kb on + strand, within ABZR87_RS04150 at 870.942 kb on + strand, within ABZR87_RS04150 at 870.942 kb on + strand, within ABZR87_RS04150 at 870.943 kb on - strand, within ABZR87_RS04150 at 870.943 kb on - strand, within ABZR87_RS04150 at 870.943 kb on - strand, within ABZR87_RS04150 at 870.954 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.209 kb on + strand, within ABZR87_RS04150 at 871.210 kb on - strand, within ABZR87_RS04150 at 871.242 kb on + strand, within ABZR87_RS04150 at 871.243 kb on - strand, within ABZR87_RS04150 at 871.338 kb on + strand at 871.338 kb on + strand at 871.339 kb on - strand at 871.339 kb on - strand at 871.400 kb on + strand, within ABZR87_RS04155 at 871.400 kb on + strand, within ABZR87_RS04155 at 871.400 kb on + strand, within ABZR87_RS04155 at 871.400 kb on + strand, within ABZR87_RS04155 at 871.400 kb on + strand, within ABZR87_RS04155 at 871.401 kb on - strand, within ABZR87_RS04155 at 871.401 kb on - strand, within ABZR87_RS04155 at 871.401 kb on - strand, within ABZR87_RS04155 at 871.401 kb on - strand, within ABZR87_RS04155 at 871.436 kb on + strand, within ABZR87_RS04155 at 871.436 kb on + strand, within ABZR87_RS04155 at 871.436 kb on + strand, within ABZR87_RS04155 at 871.437 kb on - strand, within ABZR87_RS04155 at 871.437 kb on - strand, within ABZR87_RS04155 at 871.437 kb on - strand, within ABZR87_RS04155 at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.590 kb on + strand at 871.591 kb on - strand at 871.591 kb on - strand at 871.591 kb on - strand at 871.885 kb on - strand, within ABZR87_RS04160 at 871.948 kb on - strand, within ABZR87_RS04160 at 871.948 kb on - strand, within ABZR87_RS04160 at 871.948 kb on - strand, within ABZR87_RS04160 at 872.107 kb on - strand, within ABZR87_RS04160 at 872.160 kb on + strand, within ABZR87_RS04160
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 869,555 + -0.1 869,578 + -0.2 869,578 + -0.6 869,578 + -0.9 869,578 + +0.5 869,578 + +0.1 869,579 - -0.1 869,579 - +0.3 869,579 - -0.9 869,579 - -0.3 869,579 - -0.3 869,579 - -0.7 869,648 + -0.3 869,648 + +0.1 869,648 + +0.1 869,649 - -0.7 869,649 - +0.6 869,649 - -0.1 869,649 - -1.3 869,683 - +0.7 869,732 + +0.2 869,732 + -0.5 869,732 + -2.3 869,733 - -0.2 869,828 + ABZR87_RS04145 0.18 -0.5 869,828 + ABZR87_RS04145 0.18 -0.1 869,828 + ABZR87_RS04145 0.18 -1.2 869,828 + ABZR87_RS04145 0.18 -0.3 869,828 + ABZR87_RS04145 0.18 +1.0 869,828 + ABZR87_RS04145 0.18 +0.6 869,828 + ABZR87_RS04145 0.18 -0.7 869,829 - ABZR87_RS04145 0.18 -0.8 869,829 - ABZR87_RS04145 0.18 +0.5 869,829 - ABZR87_RS04145 0.18 +0.1 869,829 - ABZR87_RS04145 0.18 -0.9 869,829 - ABZR87_RS04145 0.18 +0.6 870,020 + ABZR87_RS04145 0.50 -0.4 870,020 + ABZR87_RS04145 0.50 -0.7 870,020 + ABZR87_RS04145 0.50 +0.7 870,020 + ABZR87_RS04145 0.50 +0.6 870,021 - ABZR87_RS04145 0.50 -0.5 870,021 - ABZR87_RS04145 0.50 +2.6 870,021 - ABZR87_RS04145 0.50 -0.7 870,021 - ABZR87_RS04145 0.50 -0.2 870,021 - ABZR87_RS04145 0.50 +0.9 870,252 + ABZR87_RS04145 0.88 -0.3 870,253 - ABZR87_RS04145 0.88 -0.1 870,253 - ABZR87_RS04145 0.88 +0.1 870,362 - -0.9 870,388 - +0.1 870,398 + +0.6 870,399 - -1.1 870,537 + ABZR87_RS04150 0.12 -0.0 870,537 + ABZR87_RS04150 0.12 -0.2 870,537 + ABZR87_RS04150 0.12 +0.1 870,537 + ABZR87_RS04150 0.12 -1.0 870,537 + ABZR87_RS04150 0.12 -0.7 870,537 + ABZR87_RS04150 0.12 -0.5 870,537 + ABZR87_RS04150 0.12 +10.0 870,537 + ABZR87_RS04150 0.12 -1.8 870,537 + ABZR87_RS04150 0.12 -0.8 870,537 + ABZR87_RS04150 0.12 -1.1 870,538 - ABZR87_RS04150 0.12 +0.4 870,538 - ABZR87_RS04150 0.12 +0.3 870,538 - ABZR87_RS04150 0.12 +1.6 870,538 - ABZR87_RS04150 0.12 +2.2 870,538 - ABZR87_RS04150 0.12 -0.6 870,538 - ABZR87_RS04150 0.12 +0.3 870,538 - ABZR87_RS04150 0.12 +2.7 870,627 + ABZR87_RS04150 0.21 +0.6 870,627 + ABZR87_RS04150 0.21 +0.4 870,627 + ABZR87_RS04150 0.21 +0.2 870,628 - ABZR87_RS04150 0.22 -0.2 870,628 - ABZR87_RS04150 0.22 -0.5 870,628 - ABZR87_RS04150 0.22 -0.1 870,628 - ABZR87_RS04150 0.22 +0.9 870,912 + ABZR87_RS04150 0.53 +1.8 870,912 + ABZR87_RS04150 0.53 +0.1 870,942 + ABZR87_RS04150 0.56 -0.0 870,942 + ABZR87_RS04150 0.56 +0.2 870,942 + ABZR87_RS04150 0.56 -0.0 870,943 - ABZR87_RS04150 0.56 -1.0 870,943 - ABZR87_RS04150 0.56 -0.1 870,943 - ABZR87_RS04150 0.56 -0.1 870,954 + ABZR87_RS04150 0.57 +0.8 871,209 + ABZR87_RS04150 0.85 -0.2 871,209 + ABZR87_RS04150 0.85 -0.5 871,209 + ABZR87_RS04150 0.85 -0.4 871,209 + ABZR87_RS04150 0.85 +0.1 871,209 + ABZR87_RS04150 0.85 -0.6 871,209 + ABZR87_RS04150 0.85 +0.4 871,209 + ABZR87_RS04150 0.85 -0.6 871,209 + ABZR87_RS04150 0.85 +0.9 871,209 + ABZR87_RS04150 0.85 -1.4 871,210 - ABZR87_RS04150 0.86 -0.0 871,242 + ABZR87_RS04150 0.89 +0.5 871,243 - ABZR87_RS04150 0.89 +1.3 871,338 + -1.2 871,338 + +1.1 871,339 - -1.4 871,339 - -1.2 871,400 + ABZR87_RS04155 0.25 -1.2 871,400 + ABZR87_RS04155 0.25 -0.6 871,400 + ABZR87_RS04155 0.25 -0.9 871,400 + ABZR87_RS04155 0.25 -0.4 871,400 + ABZR87_RS04155 0.25 -0.6 871,401 - ABZR87_RS04155 0.25 -0.2 871,401 - ABZR87_RS04155 0.25 +0.4 871,401 - ABZR87_RS04155 0.25 +0.7 871,401 - ABZR87_RS04155 0.25 +0.3 871,436 + ABZR87_RS04155 0.42 -0.0 871,436 + ABZR87_RS04155 0.42 -0.4 871,436 + ABZR87_RS04155 0.42 -1.0 871,437 - ABZR87_RS04155 0.42 -0.8 871,437 - ABZR87_RS04155 0.42 -1.1 871,437 - ABZR87_RS04155 0.42 +0.7 871,590 + +0.4 871,590 + -0.9 871,590 + -2.8 871,590 + +0.3 871,590 + +0.2 871,590 + +0.1 871,590 + +0.8 871,590 + -0.3 871,590 + +0.9 871,591 - -0.3 871,591 - -1.3 871,591 - +3.0 871,885 - ABZR87_RS04160 0.35 +0.4 871,948 - ABZR87_RS04160 0.42 -0.6 871,948 - ABZR87_RS04160 0.42 -0.4 871,948 - ABZR87_RS04160 0.42 +1.9 872,107 - ABZR87_RS04160 0.59 -0.3 872,160 + ABZR87_RS04160 0.65 +0.4
Or see this region's nucleotide sequence