Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02065 and ABZR87_RS02070 are separated by 178 nucleotides ABZR87_RS02070 and ABZR87_RS02075 are separated by 114 nucleotides ABZR87_RS02075 and ABZR87_RS02080 are separated by 265 nucleotides ABZR87_RS02080 and ABZR87_RS02085 are separated by 36 nucleotides ABZR87_RS02085 and ABZR87_RS02090 are separated by 60 nucleotides
ABZR87_RS02065: ABZR87_RS02065 - M20 aminoacylase family protein, at 444,513 to 445,700
_RS02065
ABZR87_RS02070: ABZR87_RS02070 - 5S ribosomal RNA, at 445,879 to 445,991
_RS02070
ABZR87_RS02075: ABZR87_RS02075 - 23S ribosomal RNA, at 446,106 to 448,984
_RS02075
ABZR87_RS02080: ABZR87_RS02080 - tRNA-Ala, at 449,250 to 449,325
_RS02080
ABZR87_RS02085: ABZR87_RS02085 - tRNA-Ile, at 449,362 to 449,438
_RS02085
ABZR87_RS02090: ABZR87_RS02090 - 16S ribosomal RNA, at 449,499 to 451,038
_RS02090
Position (kb) 446
447
448
449 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.148 kb on - strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.172 kb on + strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.173 kb on - strand, within ABZR87_RS02065 at 445.356 kb on + strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.357 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.393 kb on - strand, within ABZR87_RS02065 at 445.506 kb on + strand, within ABZR87_RS02065 at 445.528 kb on - strand, within ABZR87_RS02065 at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.623 kb on + strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.624 kb on - strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.662 kb on + strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.663 kb on - strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.694 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.698 kb on + strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.699 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.703 kb on - strand at 445.722 kb on + strand at 445.722 kb on + strand at 445.722 kb on + strand at 446.105 kb on + strand at 447.149 kb on + strand, within ABZR87_RS02075 at 447.360 kb on + strand, within ABZR87_RS02075 at 447.623 kb on + strand, within ABZR87_RS02075
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 445,148 - ABZR87_RS02065 0.53 +0.3 445,148 - ABZR87_RS02065 0.53 -0.8 445,148 - ABZR87_RS02065 0.53 +0.5 445,148 - ABZR87_RS02065 0.53 -0.3 445,172 + ABZR87_RS02065 0.55 -0.4 445,172 + ABZR87_RS02065 0.55 +1.3 445,172 + ABZR87_RS02065 0.55 +1.3 445,173 - ABZR87_RS02065 0.56 -1.5 445,173 - ABZR87_RS02065 0.56 +0.8 445,356 + ABZR87_RS02065 0.71 +0.0 445,357 - ABZR87_RS02065 0.71 -1.1 445,357 - ABZR87_RS02065 0.71 -2.8 445,357 - ABZR87_RS02065 0.71 -1.6 445,393 - ABZR87_RS02065 0.74 -0.5 445,393 - ABZR87_RS02065 0.74 +0.3 445,506 + ABZR87_RS02065 0.84 -0.9 445,528 - ABZR87_RS02065 0.85 -2.0 445,623 + +0.1 445,623 + +0.1 445,623 + -0.6 445,623 + -0.1 445,623 + +3.2 445,624 - -0.3 445,624 - +0.9 445,624 - +1.0 445,624 - +1.9 445,624 - -0.2 445,624 - -0.4 445,624 - +0.5 445,624 - +0.0 445,662 + -0.6 445,662 + +1.4 445,662 + -0.5 445,662 + -1.0 445,663 - -1.1 445,663 - +0.4 445,663 - -0.1 445,663 - +0.4 445,663 - -0.3 445,694 + -0.7 445,694 + +0.1 445,694 + -0.3 445,698 + -1.0 445,698 + +0.4 445,698 + +1.8 445,698 + +0.5 445,698 + -0.7 445,698 + +0.3 445,698 + +0.1 445,698 + -0.2 445,698 + +1.2 445,698 + +0.4 445,698 + -1.4 445,698 + +0.5 445,698 + +0.0 445,698 + +0.4 445,698 + +0.2 445,698 + -0.1 445,698 + +2.0 445,699 - +1.4 445,699 - +0.4 445,699 - +0.5 445,699 - +0.4 445,699 - +1.2 445,699 - +0.4 445,699 - +0.8 445,699 - +0.1 445,699 - +0.9 445,703 - -0.8 445,703 - -0.5 445,703 - -0.3 445,703 - +0.9 445,722 + -0.0 445,722 + -0.1 445,722 + -1.2 446,105 + -0.2 447,149 + ABZR87_RS02075 0.36 -0.1 447,360 + ABZR87_RS02075 0.44 -1.5 447,623 + ABZR87_RS02075 0.53 -0.2
Or see this region's nucleotide sequence