Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00805

Experiment: rhizosphere sample 7; outgrowth in LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00795 and ABZR87_RS00800 are separated by 20 nucleotidesABZR87_RS00800 and ABZR87_RS00805 are separated by 70 nucleotidesABZR87_RS00805 and ABZR87_RS00810 overlap by 4 nucleotides ABZR87_RS00795: ABZR87_RS00795 - site-specific tyrosine recombinase XerD, at 159,559 to 160,494 _RS00795 ABZR87_RS00800: ABZR87_RS00800 - Cys-tRNA(Pro) deacylase, at 160,515 to 161,006 _RS00800 ABZR87_RS00805: ABZR87_RS00805 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 161,077 to 161,700 _RS00805 ABZR87_RS00810: ABZR87_RS00810 - helix-turn-helix domain-containing protein, at 161,697 to 162,713 _RS00810 Position (kb) 161 162Strain fitness (log2 ratio) -2 -1 0 1 2 3at 160.273 kb on + strand, within ABZR87_RS00795at 160.273 kb on + strand, within ABZR87_RS00795at 160.274 kb on - strand, within ABZR87_RS00795at 160.274 kb on - strand, within ABZR87_RS00795at 160.288 kb on + strand, within ABZR87_RS00795at 160.289 kb on - strand, within ABZR87_RS00795at 160.432 kb on + strandat 160.432 kb on + strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.433 kb on - strandat 160.501 kb on + strandat 160.502 kb on - strandat 160.502 kb on - strandat 160.515 kb on - strandat 160.584 kb on - strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.596 kb on + strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.597 kb on - strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.602 kb on + strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.603 kb on - strand, within ABZR87_RS00800at 160.620 kb on - strand, within ABZR87_RS00800at 160.818 kb on + strand, within ABZR87_RS00800at 160.819 kb on - strand, within ABZR87_RS00800at 160.870 kb on - strand, within ABZR87_RS00800at 160.870 kb on - strand, within ABZR87_RS00800at 160.870 kb on - strand, within ABZR87_RS00800at 160.905 kb on + strand, within ABZR87_RS00800at 160.905 kb on + strand, within ABZR87_RS00800at 160.905 kb on + strand, within ABZR87_RS00800at 160.906 kb on - strand, within ABZR87_RS00800at 161.045 kb on - strandat 161.045 kb on - strandat 161.698 kb on + strandat 161.698 kb on + strandat 161.699 kb on - strandat 162.104 kb on + strand, within ABZR87_RS00810at 162.104 kb on + strand, within ABZR87_RS00810at 162.105 kb on - strand, within ABZR87_RS00810at 162.105 kb on - strand, within ABZR87_RS00810at 162.373 kb on + strand, within ABZR87_RS00810at 162.373 kb on + strand, within ABZR87_RS00810at 162.668 kb on + strandat 162.668 kb on + strandat 162.669 kb on - strandat 162.669 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB
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160,273 + ABZR87_RS00795 0.76 -0.5
160,273 + ABZR87_RS00795 0.76 +1.0
160,274 - ABZR87_RS00795 0.76 +1.2
160,274 - ABZR87_RS00795 0.76 -0.9
160,288 + ABZR87_RS00795 0.78 +0.5
160,289 - ABZR87_RS00795 0.78 +1.8
160,432 + +0.6
160,432 + +1.5
160,433 - -0.5
160,433 - -0.8
160,433 - -1.1
160,433 - +2.9
160,433 - +1.2
160,501 + -0.8
160,502 - +0.2
160,502 - -1.4
160,515 - +0.2
160,584 - ABZR87_RS00800 0.14 -1.1
160,596 + ABZR87_RS00800 0.16 -0.2
160,596 + ABZR87_RS00800 0.16 +0.7
160,596 + ABZR87_RS00800 0.16 -1.3
160,596 + ABZR87_RS00800 0.16 -0.5
160,597 - ABZR87_RS00800 0.17 +0.3
160,597 - ABZR87_RS00800 0.17 -0.3
160,597 - ABZR87_RS00800 0.17 -1.5
160,597 - ABZR87_RS00800 0.17 -0.1
160,602 + ABZR87_RS00800 0.18 -1.6
160,602 + ABZR87_RS00800 0.18 +1.5
160,602 + ABZR87_RS00800 0.18 -0.4
160,602 + ABZR87_RS00800 0.18 -0.6
160,602 + ABZR87_RS00800 0.18 +0.2
160,602 + ABZR87_RS00800 0.18 +0.7
160,603 - ABZR87_RS00800 0.18 +0.1
160,603 - ABZR87_RS00800 0.18 +0.1
160,603 - ABZR87_RS00800 0.18 +0.9
160,603 - ABZR87_RS00800 0.18 +0.5
160,603 - ABZR87_RS00800 0.18 -2.4
160,620 - ABZR87_RS00800 0.21 +0.4
160,818 + ABZR87_RS00800 0.62 +2.2
160,819 - ABZR87_RS00800 0.62 +1.7
160,870 - ABZR87_RS00800 0.72 +0.9
160,870 - ABZR87_RS00800 0.72 +0.3
160,870 - ABZR87_RS00800 0.72 -0.9
160,905 + ABZR87_RS00800 0.79 +0.1
160,905 + ABZR87_RS00800 0.79 -0.1
160,905 + ABZR87_RS00800 0.79 +0.1
160,906 - ABZR87_RS00800 0.79 -0.1
161,045 - -0.6
161,045 - -0.3
161,698 + +0.8
161,698 + +0.5
161,699 - -2.2
162,104 + ABZR87_RS00810 0.40 +0.6
162,104 + ABZR87_RS00810 0.40 +1.0
162,105 - ABZR87_RS00810 0.40 +0.1
162,105 - ABZR87_RS00810 0.40 -0.8
162,373 + ABZR87_RS00810 0.66 +0.3
162,373 + ABZR87_RS00810 0.66 -0.1
162,668 + +1.2
162,668 + +1.3
162,669 - -0.9
162,669 - +0.2

Or see this region's nucleotide sequence