Experiment: rhizosphere sample 7; outgrowth in LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00310 and ABZR87_RS00315 are separated by 210 nucleotides ABZR87_RS00315 and ABZR87_RS00320 are separated by 454 nucleotides
ABZR87_RS00310: ABZR87_RS00310 - branched-chain amino acid ABC transporter permease, at 62,870 to 63,805
_RS00310
ABZR87_RS00315: ABZR87_RS00315 - branched-chain amino acid ABC transporter substrate-binding protein, at 64,016 to 65,224
_RS00315
ABZR87_RS00320: ABZR87_RS00320 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 65,679 to 66,662
_RS00320
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.141 kb on + strand, within ABZR87_RS00310 at 63.142 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.627 kb on + strand, within ABZR87_RS00310 at 63.716 kb on - strand at 63.716 kb on - strand at 63.716 kb on - strand at 63.720 kb on + strand at 63.720 kb on + strand at 63.720 kb on + strand at 63.721 kb on - strand at 63.721 kb on - strand at 63.732 kb on + strand at 63.754 kb on - strand at 63.794 kb on - strand at 63.794 kb on - strand at 63.798 kb on - strand at 63.799 kb on + strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.802 kb on - strand at 63.821 kb on + strand at 63.822 kb on - strand at 63.822 kb on - strand at 63.838 kb on + strand at 63.838 kb on + strand at 63.839 kb on - strand at 63.866 kb on + strand at 63.866 kb on + strand at 63.866 kb on + strand at 63.867 kb on - strand at 63.886 kb on + strand at 63.887 kb on - strand at 63.887 kb on - strand at 63.943 kb on + strand at 63.944 kb on - strand at 63.957 kb on - strand at 63.959 kb on - strand at 64.005 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.018 kb on - strand at 64.018 kb on - strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.060 kb on - strand at 64.065 kb on + strand at 64.065 kb on + strand at 64.065 kb on + strand at 64.065 kb on + strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.134 kb on + strand at 64.134 kb on + strand at 64.134 kb on + strand at 64.135 kb on - strand at 64.135 kb on - strand at 64.135 kb on - strand at 64.224 kb on + strand, within ABZR87_RS00315 at 64.224 kb on + strand, within ABZR87_RS00315 at 64.224 kb on + strand, within ABZR87_RS00315 at 64.224 kb on + strand, within ABZR87_RS00315 at 64.225 kb on - strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.272 kb on + strand, within ABZR87_RS00315 at 64.273 kb on - strand, within ABZR87_RS00315 at 64.381 kb on + strand, within ABZR87_RS00315 at 64.381 kb on + strand, within ABZR87_RS00315 at 64.382 kb on - strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.678 kb on - strand, within ABZR87_RS00315 at 64.678 kb on - strand, within ABZR87_RS00315 at 64.678 kb on - strand, within ABZR87_RS00315 at 64.726 kb on - strand, within ABZR87_RS00315 at 64.726 kb on - strand, within ABZR87_RS00315 at 64.752 kb on + strand, within ABZR87_RS00315 at 64.753 kb on - strand, within ABZR87_RS00315 at 64.803 kb on + strand, within ABZR87_RS00315 at 64.803 kb on + strand, within ABZR87_RS00315 at 64.803 kb on + strand, within ABZR87_RS00315 at 64.804 kb on - strand, within ABZR87_RS00315 at 64.804 kb on - strand, within ABZR87_RS00315 at 65.035 kb on + strand, within ABZR87_RS00315 at 65.158 kb on + strand at 65.158 kb on + strand at 65.171 kb on + strand at 65.171 kb on + strand at 65.236 kb on + strand at 65.237 kb on - strand at 65.321 kb on - strand at 65.330 kb on + strand at 65.330 kb on + strand at 65.344 kb on + strand at 65.371 kb on + strand at 65.446 kb on + strand at 65.452 kb on + strand at 65.452 kb on + strand at 65.453 kb on - strand at 65.453 kb on - strand at 65.617 kb on - strand at 65.655 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction rhizosphere sample 7; outgrowth in LB remove 63,123 + ABZR87_RS00310 0.27 -0.3 63,123 + ABZR87_RS00310 0.27 +0.8 63,123 + ABZR87_RS00310 0.27 -1.4 63,123 + ABZR87_RS00310 0.27 -1.0 63,123 + ABZR87_RS00310 0.27 -2.5 63,123 + ABZR87_RS00310 0.27 -1.0 63,123 + ABZR87_RS00310 0.27 -1.1 63,123 + ABZR87_RS00310 0.27 -1.2 63,123 + ABZR87_RS00310 0.27 +0.2 63,123 + ABZR87_RS00310 0.27 -0.2 63,124 - ABZR87_RS00310 0.27 +0.5 63,124 - ABZR87_RS00310 0.27 -2.6 63,124 - ABZR87_RS00310 0.27 -1.1 63,124 - ABZR87_RS00310 0.27 -0.5 63,141 + ABZR87_RS00310 0.29 +0.0 63,142 - ABZR87_RS00310 0.29 -0.1 63,550 - ABZR87_RS00310 0.73 +0.3 63,550 - ABZR87_RS00310 0.73 -1.1 63,550 - ABZR87_RS00310 0.73 +0.9 63,550 - ABZR87_RS00310 0.73 -0.8 63,550 - ABZR87_RS00310 0.73 -0.2 63,627 + ABZR87_RS00310 0.81 +1.6 63,716 - +0.6 63,716 - +0.2 63,716 - -1.0 63,720 + +0.6 63,720 + -1.1 63,720 + -0.0 63,721 - -1.9 63,721 - -0.7 63,732 + +0.2 63,754 - +0.4 63,794 - -0.8 63,794 - -0.8 63,798 - -0.4 63,799 + -2.4 63,800 - -0.7 63,800 - +0.3 63,800 - +1.6 63,800 - +0.8 63,802 - -0.9 63,821 + -0.4 63,822 - -0.5 63,822 - -0.2 63,838 + -1.1 63,838 + +0.0 63,839 - +1.4 63,866 + -0.9 63,866 + -0.5 63,866 + +0.3 63,867 - -1.0 63,886 + -1.0 63,887 - +0.5 63,887 - -0.1 63,943 + -1.5 63,944 - -1.2 63,957 - +3.1 63,959 - +0.3 64,005 + +0.3 64,017 + -2.2 64,017 + -0.8 64,017 + +0.2 64,017 + +1.4 64,017 + +1.0 64,017 + -0.6 64,018 - +2.6 64,018 - -0.8 64,059 + -1.1 64,059 + -2.3 64,059 + +0.1 64,059 + +0.8 64,059 + -0.2 64,060 - -0.7 64,065 + -0.1 64,065 + -0.2 64,065 + -0.4 64,065 + -0.2 64,066 - +0.7 64,066 - +0.2 64,066 - -0.7 64,066 - -0.8 64,134 + -0.3 64,134 + -1.8 64,134 + +1.1 64,135 - -0.2 64,135 - -1.4 64,135 - -0.6 64,224 + ABZR87_RS00315 0.17 -0.1 64,224 + ABZR87_RS00315 0.17 -0.6 64,224 + ABZR87_RS00315 0.17 +0.3 64,224 + ABZR87_RS00315 0.17 -0.6 64,225 - ABZR87_RS00315 0.17 -0.7 64,239 + ABZR87_RS00315 0.18 -1.6 64,239 + ABZR87_RS00315 0.18 -0.4 64,239 + ABZR87_RS00315 0.18 -1.5 64,239 + ABZR87_RS00315 0.18 -1.6 64,240 - ABZR87_RS00315 0.19 +0.9 64,240 - ABZR87_RS00315 0.19 -1.6 64,240 - ABZR87_RS00315 0.19 +0.2 64,240 - ABZR87_RS00315 0.19 -1.2 64,272 + ABZR87_RS00315 0.21 +0.1 64,273 - ABZR87_RS00315 0.21 +0.1 64,381 + ABZR87_RS00315 0.30 -1.1 64,381 + ABZR87_RS00315 0.30 -0.4 64,382 - ABZR87_RS00315 0.30 -2.2 64,473 + ABZR87_RS00315 0.38 +0.4 64,473 + ABZR87_RS00315 0.38 +0.4 64,473 + ABZR87_RS00315 0.38 -0.9 64,473 + ABZR87_RS00315 0.38 -0.4 64,473 + ABZR87_RS00315 0.38 -0.9 64,474 - ABZR87_RS00315 0.38 -0.6 64,474 - ABZR87_RS00315 0.38 -1.6 64,474 - ABZR87_RS00315 0.38 -1.6 64,474 - ABZR87_RS00315 0.38 +0.5 64,474 - ABZR87_RS00315 0.38 -0.9 64,678 - ABZR87_RS00315 0.55 -1.3 64,678 - ABZR87_RS00315 0.55 +0.5 64,678 - ABZR87_RS00315 0.55 -1.6 64,726 - ABZR87_RS00315 0.59 -0.9 64,726 - ABZR87_RS00315 0.59 -0.0 64,752 + ABZR87_RS00315 0.61 -3.1 64,753 - ABZR87_RS00315 0.61 -0.3 64,803 + ABZR87_RS00315 0.65 -0.0 64,803 + ABZR87_RS00315 0.65 -0.8 64,803 + ABZR87_RS00315 0.65 +0.0 64,804 - ABZR87_RS00315 0.65 +0.0 64,804 - ABZR87_RS00315 0.65 +0.8 65,035 + ABZR87_RS00315 0.84 -0.5 65,158 + +1.8 65,158 + +0.5 65,171 + +0.4 65,171 + -1.4 65,236 + -1.5 65,237 - +1.1 65,321 - -0.0 65,330 + -0.7 65,330 + +0.8 65,344 + -0.9 65,371 + +1.2 65,446 + -2.4 65,452 + -0.1 65,452 + +0.0 65,453 - -0.6 65,453 - -0.7 65,617 - +0.7 65,655 - -0.5
Or see this region's nucleotide sequence