Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2496 and Rru_A2497 are separated by 58 nucleotides Rru_A2497 and Rru_A2498 are separated by 303 nucleotides
Rru_A2496: Rru_A2496 - Polysaccharide biosynthesis protein (NCBI), at 2,902,216 to 2,903,487
_A2496
Rru_A2497: Rru_A2497 - Peptide chain release factor 3 (NCBI), at 2,903,546 to 2,905,138
_A2497
Rru_A2498: Rru_A2498 - ABC transporter component (NCBI), at 2,905,442 to 2,906,425
_A2498
Position (kb)
2903
2904
2905
2906 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2902.734 kb on - strand, within Rru_A2496 at 2902.749 kb on + strand, within Rru_A2496 at 2902.883 kb on + strand, within Rru_A2496 at 2902.883 kb on + strand, within Rru_A2496 at 2903.019 kb on - strand, within Rru_A2496 at 2903.273 kb on + strand, within Rru_A2496 at 2903.569 kb on + strand at 2904.112 kb on + strand, within Rru_A2497 at 2904.112 kb on + strand, within Rru_A2497 at 2904.113 kb on - strand, within Rru_A2497 at 2904.113 kb on - strand, within Rru_A2497 at 2904.224 kb on - strand, within Rru_A2497 at 2904.224 kb on - strand, within Rru_A2497 at 2904.224 kb on - strand, within Rru_A2497 at 2904.598 kb on - strand, within Rru_A2497 at 2904.724 kb on + strand, within Rru_A2497 at 2904.724 kb on + strand, within Rru_A2497 at 2904.725 kb on - strand, within Rru_A2497 at 2904.846 kb on + strand, within Rru_A2497 at 2904.846 kb on + strand, within Rru_A2497 at 2904.847 kb on - strand, within Rru_A2497 at 2904.850 kb on + strand, within Rru_A2497 at 2904.851 kb on - strand, within Rru_A2497 at 2904.851 kb on - strand, within Rru_A2497 at 2904.851 kb on - strand, within Rru_A2497 at 2904.910 kb on - strand, within Rru_A2497 at 2904.915 kb on + strand, within Rru_A2497 at 2904.916 kb on - strand, within Rru_A2497 at 2904.916 kb on - strand, within Rru_A2497 at 2905.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 2,902,734 - Rru_A2496 0.41 +1.1 2,902,749 + Rru_A2496 0.42 +2.3 2,902,883 + Rru_A2496 0.52 -0.2 2,902,883 + Rru_A2496 0.52 -0.3 2,903,019 - Rru_A2496 0.63 +2.1 2,903,273 + Rru_A2496 0.83 -0.9 2,903,569 + -0.7 2,904,112 + Rru_A2497 0.36 -0.2 2,904,112 + Rru_A2497 0.36 -1.5 2,904,113 - Rru_A2497 0.36 -0.8 2,904,113 - Rru_A2497 0.36 +1.1 2,904,224 - Rru_A2497 0.43 -0.0 2,904,224 - Rru_A2497 0.43 -2.5 2,904,224 - Rru_A2497 0.43 -1.7 2,904,598 - Rru_A2497 0.66 +0.1 2,904,724 + Rru_A2497 0.74 +0.5 2,904,724 + Rru_A2497 0.74 +1.1 2,904,725 - Rru_A2497 0.74 -0.7 2,904,846 + Rru_A2497 0.82 -0.9 2,904,846 + Rru_A2497 0.82 +0.5 2,904,847 - Rru_A2497 0.82 -0.1 2,904,850 + Rru_A2497 0.82 +0.1 2,904,851 - Rru_A2497 0.82 -0.5 2,904,851 - Rru_A2497 0.82 -1.5 2,904,851 - Rru_A2497 0.82 -1.7 2,904,910 - Rru_A2497 0.86 -0.3 2,904,915 + Rru_A2497 0.86 -0.3 2,904,916 - Rru_A2497 0.86 -1.4 2,904,916 - Rru_A2497 0.86 -0.9 2,905,103 - +1.0
Or see this region's nucleotide sequence