Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1962

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1960 and Rru_A1961 are separated by 91 nucleotidesRru_A1961 and Rru_A1962 are separated by 59 nucleotidesRru_A1962 and Rru_A1963 are separated by 12 nucleotides Rru_A1960: Rru_A1960 - O-methyltransferase, family 3 (NCBI), at 2,268,315 to 2,268,983 _A1960 Rru_A1961: Rru_A1961 - Transcriptional Regulator, TetR family (NCBI), at 2,269,075 to 2,269,716 _A1961 Rru_A1962: Rru_A1962 - hypothetical protein (NCBI), at 2,269,776 to 2,270,072 _A1962 Rru_A1963: Rru_A1963 - Adenylosuccinate lyase (NCBI), at 2,270,085 to 2,271,386 _A1963 Position (kb) 2269 2270 2271Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2268.824 kb on - strand, within Rru_A1960at 2268.824 kb on - strand, within Rru_A1960at 2268.835 kb on + strand, within Rru_A1960at 2268.836 kb on - strand, within Rru_A1960at 2268.974 kb on + strandat 2268.975 kb on - strandat 2269.101 kb on + strandat 2269.253 kb on - strand, within Rru_A1961at 2269.258 kb on + strand, within Rru_A1961at 2269.258 kb on + strand, within Rru_A1961at 2269.258 kb on + strand, within Rru_A1961at 2269.258 kb on + strand, within Rru_A1961at 2269.259 kb on - strand, within Rru_A1961at 2269.259 kb on - strand, within Rru_A1961at 2269.267 kb on - strand, within Rru_A1961at 2269.377 kb on + strand, within Rru_A1961at 2269.457 kb on - strand, within Rru_A1961at 2269.648 kb on + strand, within Rru_A1961at 2269.681 kb on + strandat 2269.682 kb on - strandat 2269.756 kb on - strandat 2269.756 kb on - strandat 2269.756 kb on - strandat 2269.756 kb on - strandat 2269.757 kb on + strandat 2269.764 kb on + strandat 2269.765 kb on - strandat 2269.921 kb on - strand, within Rru_A1962at 2269.921 kb on - strand, within Rru_A1962at 2269.921 kb on - strand, within Rru_A1962at 2269.939 kb on - strand, within Rru_A1962at 2269.939 kb on - strand, within Rru_A1962at 2269.988 kb on + strand, within Rru_A1962at 2270.037 kb on - strand, within Rru_A1962at 2270.086 kb on + strandat 2270.425 kb on + strand, within Rru_A1963at 2270.425 kb on + strand, within Rru_A1963at 2270.426 kb on - strand, within Rru_A1963at 2270.484 kb on - strand, within Rru_A1963at 2270.830 kb on + strand, within Rru_A1963at 2270.830 kb on + strand, within Rru_A1963at 2270.830 kb on + strand, within Rru_A1963at 2270.830 kb on + strand, within Rru_A1963at 2270.830 kb on + strand, within Rru_A1963at 2270.831 kb on - strand, within Rru_A1963at 2270.831 kb on - strand, within Rru_A1963at 2270.831 kb on - strand, within Rru_A1963at 2270.831 kb on - strand, within Rru_A1963at 2270.831 kb on - strand, within Rru_A1963at 2270.859 kb on + strand, within Rru_A1963at 2270.860 kb on - strand, within Rru_A1963at 2270.860 kb on - strand, within Rru_A1963at 2271.072 kb on + strand, within Rru_A1963

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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2,268,824 - Rru_A1960 0.76 +0.0
2,268,824 - Rru_A1960 0.76 +0.1
2,268,835 + Rru_A1960 0.78 +0.3
2,268,836 - Rru_A1960 0.78 +0.2
2,268,974 + +0.7
2,268,975 - +0.6
2,269,101 + -0.8
2,269,253 - Rru_A1961 0.28 -0.5
2,269,258 + Rru_A1961 0.29 -0.1
2,269,258 + Rru_A1961 0.29 +0.8
2,269,258 + Rru_A1961 0.29 +0.4
2,269,258 + Rru_A1961 0.29 -1.6
2,269,259 - Rru_A1961 0.29 +2.1
2,269,259 - Rru_A1961 0.29 +0.4
2,269,267 - Rru_A1961 0.30 +0.1
2,269,377 + Rru_A1961 0.47 +0.6
2,269,457 - Rru_A1961 0.60 -1.4
2,269,648 + Rru_A1961 0.89 +0.2
2,269,681 + +0.6
2,269,682 - +1.7
2,269,756 - +0.4
2,269,756 - -0.3
2,269,756 - -0.0
2,269,756 - -0.5
2,269,757 + +0.6
2,269,764 + +0.2
2,269,765 - -0.6
2,269,921 - Rru_A1962 0.49 -3.0
2,269,921 - Rru_A1962 0.49 -1.3
2,269,921 - Rru_A1962 0.49 -1.5
2,269,939 - Rru_A1962 0.55 -0.3
2,269,939 - Rru_A1962 0.55 -0.7
2,269,988 + Rru_A1962 0.71 -1.2
2,270,037 - Rru_A1962 0.88 -0.5
2,270,086 + +0.8
2,270,425 + Rru_A1963 0.26 +1.3
2,270,425 + Rru_A1963 0.26 +0.2
2,270,426 - Rru_A1963 0.26 +1.1
2,270,484 - Rru_A1963 0.31 -0.3
2,270,830 + Rru_A1963 0.57 -1.0
2,270,830 + Rru_A1963 0.57 -2.1
2,270,830 + Rru_A1963 0.57 +0.4
2,270,830 + Rru_A1963 0.57 -0.1
2,270,830 + Rru_A1963 0.57 -0.7
2,270,831 - Rru_A1963 0.57 -0.4
2,270,831 - Rru_A1963 0.57 -0.1
2,270,831 - Rru_A1963 0.57 +0.1
2,270,831 - Rru_A1963 0.57 -0.2
2,270,831 - Rru_A1963 0.57 +1.6
2,270,859 + Rru_A1963 0.59 -0.5
2,270,860 - Rru_A1963 0.60 -0.1
2,270,860 - Rru_A1963 0.60 -0.3
2,271,072 + Rru_A1963 0.76 -1.3

Or see this region's nucleotide sequence