Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1865

Experiment: Valeric 25 mM; anaerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1863 and Rru_A1864 are separated by 64 nucleotidesRru_A1864 and Rru_A1865 are separated by 43 nucleotidesRru_A1865 and Rru_A1866 are separated by 298 nucleotides Rru_A1863: Rru_A1863 - Glutathione peroxidase (NCBI), at 2,160,405 to 2,160,992 _A1863 Rru_A1864: Rru_A1864 - SmpB protein (NCBI), at 2,161,057 to 2,161,539 _A1864 Rru_A1865: Rru_A1865 - Dihydrodipicolinate synthase subfamily (NCBI), at 2,161,583 to 2,162,464 _A1865 Rru_A1866: Rru_A1866 - Lytic transglycosylase, catalytic (NCBI), at 2,162,763 to 2,164,757 _A1866 Position (kb) 2161 2162 2163Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2160.763 kb on + strand, within Rru_A1863at 2160.763 kb on + strand, within Rru_A1863at 2160.866 kb on + strand, within Rru_A1863at 2160.866 kb on + strand, within Rru_A1863at 2160.867 kb on - strand, within Rru_A1863at 2160.867 kb on - strand, within Rru_A1863at 2160.867 kb on - strand, within Rru_A1863at 2160.867 kb on - strand, within Rru_A1863at 2160.867 kb on - strand, within Rru_A1863at 2160.867 kb on - strand, within Rru_A1863at 2160.867 kb on - strand, within Rru_A1863at 2160.869 kb on - strand, within Rru_A1863at 2161.562 kb on - strandat 2161.856 kb on - strand, within Rru_A1865at 2161.856 kb on - strand, within Rru_A1865at 2161.994 kb on - strand, within Rru_A1865at 2162.068 kb on - strand, within Rru_A1865at 2162.068 kb on - strand, within Rru_A1865at 2162.068 kb on - strand, within Rru_A1865at 2162.068 kb on - strand, within Rru_A1865at 2162.122 kb on - strand, within Rru_A1865at 2162.147 kb on - strand, within Rru_A1865at 2162.147 kb on - strand, within Rru_A1865at 2162.147 kb on - strand, within Rru_A1865at 2162.147 kb on - strand, within Rru_A1865at 2162.147 kb on - strand, within Rru_A1865at 2162.149 kb on - strand, within Rru_A1865at 2162.149 kb on - strand, within Rru_A1865at 2162.149 kb on - strand, within Rru_A1865at 2162.149 kb on - strand, within Rru_A1865at 2162.476 kb on + strandat 2162.476 kb on + strandat 2162.480 kb on - strandat 2162.480 kb on - strandat 2162.480 kb on - strandat 2162.480 kb on - strandat 2162.480 kb on - strandat 2162.480 kb on - strandat 2162.527 kb on - strandat 2162.555 kb on + strandat 2162.556 kb on - strandat 2162.556 kb on - strandat 2162.556 kb on - strandat 2162.556 kb on - strandat 2162.556 kb on - strandat 2162.556 kb on - strandat 2162.558 kb on - strandat 2162.853 kb on + strandat 2162.854 kb on - strandat 2162.854 kb on - strandat 2162.854 kb on - strandat 2162.854 kb on - strandat 2162.854 kb on - strandat 2162.854 kb on - strandat 2163.168 kb on + strand, within Rru_A1866at 2163.270 kb on + strand, within Rru_A1866at 2163.270 kb on + strand, within Rru_A1866at 2163.271 kb on - strand, within Rru_A1866at 2163.271 kb on - strand, within Rru_A1866at 2163.271 kb on - strand, within Rru_A1866

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Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
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2,160,763 + Rru_A1863 0.61 +0.5
2,160,763 + Rru_A1863 0.61 +1.4
2,160,866 + Rru_A1863 0.78 +0.3
2,160,866 + Rru_A1863 0.78 -0.1
2,160,867 - Rru_A1863 0.79 +0.3
2,160,867 - Rru_A1863 0.79 -1.6
2,160,867 - Rru_A1863 0.79 -0.4
2,160,867 - Rru_A1863 0.79 +0.2
2,160,867 - Rru_A1863 0.79 +0.0
2,160,867 - Rru_A1863 0.79 -0.0
2,160,867 - Rru_A1863 0.79 -0.0
2,160,869 - Rru_A1863 0.79 -1.6
2,161,562 - -1.0
2,161,856 - Rru_A1865 0.31 +0.6
2,161,856 - Rru_A1865 0.31 -2.3
2,161,994 - Rru_A1865 0.47 -1.0
2,162,068 - Rru_A1865 0.55 -0.4
2,162,068 - Rru_A1865 0.55 -3.1
2,162,068 - Rru_A1865 0.55 -2.3
2,162,068 - Rru_A1865 0.55 -1.9
2,162,122 - Rru_A1865 0.61 -1.9
2,162,147 - Rru_A1865 0.64 -0.9
2,162,147 - Rru_A1865 0.64 -0.3
2,162,147 - Rru_A1865 0.64 -1.9
2,162,147 - Rru_A1865 0.64 -2.9
2,162,147 - Rru_A1865 0.64 +0.1
2,162,149 - Rru_A1865 0.64 -3.9
2,162,149 - Rru_A1865 0.64 -2.3
2,162,149 - Rru_A1865 0.64 -3.0
2,162,149 - Rru_A1865 0.64 -2.7
2,162,476 + -0.2
2,162,476 + -1.1
2,162,480 - -0.7
2,162,480 - -0.0
2,162,480 - +0.3
2,162,480 - -0.1
2,162,480 - -0.2
2,162,480 - +0.7
2,162,527 - +0.3
2,162,555 + +0.2
2,162,556 - +0.3
2,162,556 - +0.4
2,162,556 - +0.9
2,162,556 - +0.1
2,162,556 - -1.0
2,162,556 - +1.0
2,162,558 - -1.0
2,162,853 + -0.1
2,162,854 - -0.2
2,162,854 - +1.0
2,162,854 - +0.1
2,162,854 - +0.9
2,162,854 - +0.1
2,162,854 - -0.1
2,163,168 + Rru_A1866 0.20 -0.7
2,163,270 + Rru_A1866 0.25 -0.2
2,163,270 + Rru_A1866 0.25 +0.3
2,163,271 - Rru_A1866 0.25 -0.5
2,163,271 - Rru_A1866 0.25 +0.2
2,163,271 - Rru_A1866 0.25 +0.9

Or see this region's nucleotide sequence