Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1863 and Rru_A1864 are separated by 64 nucleotides Rru_A1864 and Rru_A1865 are separated by 43 nucleotides Rru_A1865 and Rru_A1866 are separated by 298 nucleotides
Rru_A1863: Rru_A1863 - Glutathione peroxidase (NCBI), at 2,160,405 to 2,160,992
_A1863
Rru_A1864: Rru_A1864 - SmpB protein (NCBI), at 2,161,057 to 2,161,539
_A1864
Rru_A1865: Rru_A1865 - Dihydrodipicolinate synthase subfamily (NCBI), at 2,161,583 to 2,162,464
_A1865
Rru_A1866: Rru_A1866 - Lytic transglycosylase, catalytic (NCBI), at 2,162,763 to 2,164,757
_A1866
Position (kb)
2161
2162
2163 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2160.763 kb on + strand, within Rru_A1863 at 2160.763 kb on + strand, within Rru_A1863 at 2160.866 kb on + strand, within Rru_A1863 at 2160.866 kb on + strand, within Rru_A1863 at 2160.867 kb on - strand, within Rru_A1863 at 2160.867 kb on - strand, within Rru_A1863 at 2160.867 kb on - strand, within Rru_A1863 at 2160.867 kb on - strand, within Rru_A1863 at 2160.867 kb on - strand, within Rru_A1863 at 2160.867 kb on - strand, within Rru_A1863 at 2160.867 kb on - strand, within Rru_A1863 at 2160.869 kb on - strand, within Rru_A1863 at 2161.562 kb on - strand at 2161.856 kb on - strand, within Rru_A1865 at 2161.856 kb on - strand, within Rru_A1865 at 2161.994 kb on - strand, within Rru_A1865 at 2162.068 kb on - strand, within Rru_A1865 at 2162.068 kb on - strand, within Rru_A1865 at 2162.068 kb on - strand, within Rru_A1865 at 2162.068 kb on - strand, within Rru_A1865 at 2162.122 kb on - strand, within Rru_A1865 at 2162.147 kb on - strand, within Rru_A1865 at 2162.147 kb on - strand, within Rru_A1865 at 2162.147 kb on - strand, within Rru_A1865 at 2162.147 kb on - strand, within Rru_A1865 at 2162.147 kb on - strand, within Rru_A1865 at 2162.149 kb on - strand, within Rru_A1865 at 2162.149 kb on - strand, within Rru_A1865 at 2162.149 kb on - strand, within Rru_A1865 at 2162.149 kb on - strand, within Rru_A1865 at 2162.476 kb on + strand at 2162.476 kb on + strand at 2162.480 kb on - strand at 2162.480 kb on - strand at 2162.480 kb on - strand at 2162.480 kb on - strand at 2162.480 kb on - strand at 2162.480 kb on - strand at 2162.527 kb on - strand at 2162.555 kb on + strand at 2162.556 kb on - strand at 2162.556 kb on - strand at 2162.556 kb on - strand at 2162.556 kb on - strand at 2162.556 kb on - strand at 2162.556 kb on - strand at 2162.558 kb on - strand at 2162.853 kb on + strand at 2162.854 kb on - strand at 2162.854 kb on - strand at 2162.854 kb on - strand at 2162.854 kb on - strand at 2162.854 kb on - strand at 2162.854 kb on - strand at 2163.168 kb on + strand, within Rru_A1866 at 2163.270 kb on + strand, within Rru_A1866 at 2163.270 kb on + strand, within Rru_A1866 at 2163.271 kb on - strand, within Rru_A1866 at 2163.271 kb on - strand, within Rru_A1866 at 2163.271 kb on - strand, within Rru_A1866
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 2,160,763 + Rru_A1863 0.61 +0.5 2,160,763 + Rru_A1863 0.61 +1.4 2,160,866 + Rru_A1863 0.78 +0.3 2,160,866 + Rru_A1863 0.78 -0.1 2,160,867 - Rru_A1863 0.79 +0.3 2,160,867 - Rru_A1863 0.79 -1.6 2,160,867 - Rru_A1863 0.79 -0.4 2,160,867 - Rru_A1863 0.79 +0.2 2,160,867 - Rru_A1863 0.79 +0.0 2,160,867 - Rru_A1863 0.79 -0.0 2,160,867 - Rru_A1863 0.79 -0.0 2,160,869 - Rru_A1863 0.79 -1.6 2,161,562 - -1.0 2,161,856 - Rru_A1865 0.31 +0.6 2,161,856 - Rru_A1865 0.31 -2.3 2,161,994 - Rru_A1865 0.47 -1.0 2,162,068 - Rru_A1865 0.55 -0.4 2,162,068 - Rru_A1865 0.55 -3.1 2,162,068 - Rru_A1865 0.55 -2.3 2,162,068 - Rru_A1865 0.55 -1.9 2,162,122 - Rru_A1865 0.61 -1.9 2,162,147 - Rru_A1865 0.64 -0.9 2,162,147 - Rru_A1865 0.64 -0.3 2,162,147 - Rru_A1865 0.64 -1.9 2,162,147 - Rru_A1865 0.64 -2.9 2,162,147 - Rru_A1865 0.64 +0.1 2,162,149 - Rru_A1865 0.64 -3.9 2,162,149 - Rru_A1865 0.64 -2.3 2,162,149 - Rru_A1865 0.64 -3.0 2,162,149 - Rru_A1865 0.64 -2.7 2,162,476 + -0.2 2,162,476 + -1.1 2,162,480 - -0.7 2,162,480 - -0.0 2,162,480 - +0.3 2,162,480 - -0.1 2,162,480 - -0.2 2,162,480 - +0.7 2,162,527 - +0.3 2,162,555 + +0.2 2,162,556 - +0.3 2,162,556 - +0.4 2,162,556 - +0.9 2,162,556 - +0.1 2,162,556 - -1.0 2,162,556 - +1.0 2,162,558 - -1.0 2,162,853 + -0.1 2,162,854 - -0.2 2,162,854 - +1.0 2,162,854 - +0.1 2,162,854 - +0.9 2,162,854 - +0.1 2,162,854 - -0.1 2,163,168 + Rru_A1866 0.20 -0.7 2,163,270 + Rru_A1866 0.25 -0.2 2,163,270 + Rru_A1866 0.25 +0.3 2,163,271 - Rru_A1866 0.25 -0.5 2,163,271 - Rru_A1866 0.25 +0.2 2,163,271 - Rru_A1866 0.25 +0.9
Or see this region's nucleotide sequence