Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0979

Experiment: Valeric 25 mM; anaerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0977 and Rru_A0978 are separated by 358 nucleotidesRru_A0978 and Rru_A0979 are separated by 96 nucleotidesRru_A0979 and Rru_A0980 are separated by 99 nucleotides Rru_A0977: Rru_A0977 - hypothetical protein (NCBI), at 1,162,992 to 1,163,294 _A0977 Rru_A0978: Rru_A0978 - Transcriptional Regulator, MarR family (NCBI), at 1,163,653 to 1,164,162 _A0978 Rru_A0979: Rru_A0979 - extracellular solute-binding protein, family 5 (NCBI), at 1,164,259 to 1,165,851 _A0979 Rru_A0980: Rru_A0980 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 1,165,951 to 1,166,892 _A0980 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1163.318 kb on - strandat 1163.318 kb on - strandat 1163.401 kb on + strandat 1163.713 kb on + strand, within Rru_A0978at 1163.713 kb on + strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.714 kb on - strand, within Rru_A0978at 1163.773 kb on + strand, within Rru_A0978at 1163.872 kb on + strand, within Rru_A0978at 1163.873 kb on - strand, within Rru_A0978at 1164.218 kb on + strandat 1164.219 kb on - strandat 1164.219 kb on - strandat 1164.253 kb on - strandat 1164.253 kb on - strandat 1164.253 kb on - strandat 1164.267 kb on + strandat 1164.267 kb on + strandat 1164.267 kb on + strandat 1164.274 kb on - strandat 1164.442 kb on + strand, within Rru_A0979at 1164.442 kb on + strand, within Rru_A0979at 1164.442 kb on + strand, within Rru_A0979at 1164.442 kb on + strand, within Rru_A0979at 1164.443 kb on - strand, within Rru_A0979at 1164.443 kb on - strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.444 kb on + strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.445 kb on - strand, within Rru_A0979at 1164.512 kb on - strand, within Rru_A0979at 1164.512 kb on - strand, within Rru_A0979at 1164.512 kb on - strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.841 kb on + strand, within Rru_A0979at 1164.842 kb on - strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.843 kb on + strand, within Rru_A0979at 1164.844 kb on - strand, within Rru_A0979at 1164.844 kb on - strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.904 kb on + strand, within Rru_A0979at 1164.905 kb on - strand, within Rru_A0979at 1164.955 kb on + strand, within Rru_A0979at 1164.956 kb on - strand, within Rru_A0979at 1164.956 kb on - strand, within Rru_A0979at 1165.060 kb on + strand, within Rru_A0979at 1165.061 kb on - strand, within Rru_A0979at 1165.061 kb on - strand, within Rru_A0979at 1165.061 kb on - strand, within Rru_A0979at 1165.240 kb on + strand, within Rru_A0979at 1165.240 kb on + strand, within Rru_A0979at 1165.240 kb on + strand, within Rru_A0979at 1165.240 kb on + strand, within Rru_A0979at 1165.240 kb on + strand, within Rru_A0979at 1165.241 kb on - strand, within Rru_A0979at 1165.241 kb on - strand, within Rru_A0979at 1165.261 kb on + strand, within Rru_A0979at 1165.262 kb on - strand, within Rru_A0979at 1165.279 kb on + strand, within Rru_A0979at 1165.279 kb on + strand, within Rru_A0979at 1165.279 kb on + strand, within Rru_A0979at 1165.279 kb on + strand, within Rru_A0979at 1165.280 kb on - strand, within Rru_A0979at 1165.280 kb on - strand, within Rru_A0979at 1165.280 kb on - strand, within Rru_A0979at 1165.280 kb on - strand, within Rru_A0979at 1165.280 kb on - strand, within Rru_A0979at 1165.384 kb on + strand, within Rru_A0979at 1165.385 kb on - strand, within Rru_A0979at 1165.415 kb on - strand, within Rru_A0979at 1165.415 kb on - strand, within Rru_A0979at 1165.415 kb on - strand, within Rru_A0979at 1165.415 kb on - strand, within Rru_A0979at 1165.465 kb on - strand, within Rru_A0979at 1165.569 kb on + strand, within Rru_A0979at 1166.396 kb on - strand, within Rru_A0980at 1166.449 kb on + strand, within Rru_A0980at 1166.449 kb on + strand, within Rru_A0980at 1166.449 kb on + strand, within Rru_A0980at 1166.449 kb on + strand, within Rru_A0980at 1166.450 kb on - strand, within Rru_A0980at 1166.524 kb on + strand, within Rru_A0980at 1166.524 kb on + strand, within Rru_A0980at 1166.524 kb on + strand, within Rru_A0980at 1166.525 kb on - strand, within Rru_A0980at 1166.525 kb on - strand, within Rru_A0980at 1166.525 kb on - strand, within Rru_A0980at 1166.525 kb on - strand, within Rru_A0980at 1166.525 kb on - strand, within Rru_A0980at 1166.525 kb on - strand, within Rru_A0980at 1166.525 kb on - strand, within Rru_A0980at 1166.584 kb on + strand, within Rru_A0980at 1166.585 kb on - strand, within Rru_A0980at 1166.827 kb on + strandat 1166.828 kb on - strandat 1166.828 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic
remove
1,163,318 - +0.7
1,163,318 - +0.3
1,163,401 + -0.3
1,163,713 + Rru_A0978 0.12 +0.2
1,163,713 + Rru_A0978 0.12 +1.7
1,163,714 - Rru_A0978 0.12 +0.1
1,163,714 - Rru_A0978 0.12 +0.4
1,163,714 - Rru_A0978 0.12 -0.5
1,163,714 - Rru_A0978 0.12 +0.7
1,163,714 - Rru_A0978 0.12 +0.5
1,163,773 + Rru_A0978 0.24 -0.1
1,163,872 + Rru_A0978 0.43 +0.4
1,163,873 - Rru_A0978 0.43 -0.9
1,164,218 + -1.3
1,164,219 - -0.2
1,164,219 - -0.9
1,164,253 - -0.6
1,164,253 - -0.4
1,164,253 - +0.0
1,164,267 + +1.5
1,164,267 + +1.1
1,164,267 + -0.3
1,164,274 - -2.6
1,164,442 + Rru_A0979 0.11 +0.6
1,164,442 + Rru_A0979 0.11 -0.3
1,164,442 + Rru_A0979 0.11 -0.5
1,164,442 + Rru_A0979 0.11 -1.7
1,164,443 - Rru_A0979 0.12 -1.4
1,164,443 - Rru_A0979 0.12 +0.3
1,164,444 + Rru_A0979 0.12 -0.7
1,164,444 + Rru_A0979 0.12 -4.3
1,164,444 + Rru_A0979 0.12 +1.3
1,164,444 + Rru_A0979 0.12 +0.0
1,164,445 - Rru_A0979 0.12 +2.6
1,164,445 - Rru_A0979 0.12 -0.0
1,164,445 - Rru_A0979 0.12 -3.2
1,164,445 - Rru_A0979 0.12 +0.3
1,164,445 - Rru_A0979 0.12 +0.8
1,164,512 - Rru_A0979 0.16 -0.5
1,164,512 - Rru_A0979 0.16 -0.2
1,164,512 - Rru_A0979 0.16 +0.3
1,164,841 + Rru_A0979 0.37 -0.0
1,164,841 + Rru_A0979 0.37 +1.2
1,164,841 + Rru_A0979 0.37 +0.4
1,164,841 + Rru_A0979 0.37 +0.1
1,164,841 + Rru_A0979 0.37 -0.0
1,164,841 + Rru_A0979 0.37 +1.0
1,164,842 - Rru_A0979 0.37 -0.5
1,164,843 + Rru_A0979 0.37 -0.1
1,164,843 + Rru_A0979 0.37 +1.6
1,164,843 + Rru_A0979 0.37 +0.0
1,164,843 + Rru_A0979 0.37 +0.5
1,164,843 + Rru_A0979 0.37 -0.1
1,164,843 + Rru_A0979 0.37 -2.3
1,164,844 - Rru_A0979 0.37 -0.1
1,164,844 - Rru_A0979 0.37 -0.2
1,164,904 + Rru_A0979 0.40 +0.3
1,164,904 + Rru_A0979 0.40 +0.3
1,164,904 + Rru_A0979 0.40 +0.1
1,164,904 + Rru_A0979 0.40 -0.9
1,164,905 - Rru_A0979 0.41 -1.2
1,164,955 + Rru_A0979 0.44 +0.3
1,164,956 - Rru_A0979 0.44 +2.0
1,164,956 - Rru_A0979 0.44 -0.1
1,165,060 + Rru_A0979 0.50 -3.1
1,165,061 - Rru_A0979 0.50 +0.2
1,165,061 - Rru_A0979 0.50 -0.1
1,165,061 - Rru_A0979 0.50 -1.1
1,165,240 + Rru_A0979 0.62 +1.0
1,165,240 + Rru_A0979 0.62 -0.7
1,165,240 + Rru_A0979 0.62 +0.4
1,165,240 + Rru_A0979 0.62 +0.1
1,165,240 + Rru_A0979 0.62 +0.0
1,165,241 - Rru_A0979 0.62 -0.1
1,165,241 - Rru_A0979 0.62 +0.5
1,165,261 + Rru_A0979 0.63 +4.9
1,165,262 - Rru_A0979 0.63 -0.2
1,165,279 + Rru_A0979 0.64 +0.8
1,165,279 + Rru_A0979 0.64 +0.4
1,165,279 + Rru_A0979 0.64 +0.5
1,165,279 + Rru_A0979 0.64 -0.1
1,165,280 - Rru_A0979 0.64 +1.5
1,165,280 - Rru_A0979 0.64 -0.4
1,165,280 - Rru_A0979 0.64 +0.0
1,165,280 - Rru_A0979 0.64 -0.8
1,165,280 - Rru_A0979 0.64 +0.4
1,165,384 + Rru_A0979 0.71 -0.6
1,165,385 - Rru_A0979 0.71 +0.7
1,165,415 - Rru_A0979 0.73 -0.1
1,165,415 - Rru_A0979 0.73 +0.3
1,165,415 - Rru_A0979 0.73 -2.7
1,165,415 - Rru_A0979 0.73 -0.6
1,165,465 - Rru_A0979 0.76 -0.2
1,165,569 + Rru_A0979 0.82 +0.9
1,166,396 - Rru_A0980 0.47 -0.8
1,166,449 + Rru_A0980 0.53 -0.2
1,166,449 + Rru_A0980 0.53 -1.5
1,166,449 + Rru_A0980 0.53 -0.7
1,166,449 + Rru_A0980 0.53 +0.2
1,166,450 - Rru_A0980 0.53 -0.6
1,166,524 + Rru_A0980 0.61 -0.3
1,166,524 + Rru_A0980 0.61 -1.0
1,166,524 + Rru_A0980 0.61 +0.1
1,166,525 - Rru_A0980 0.61 +1.0
1,166,525 - Rru_A0980 0.61 -2.2
1,166,525 - Rru_A0980 0.61 +0.5
1,166,525 - Rru_A0980 0.61 +0.4
1,166,525 - Rru_A0980 0.61 +0.5
1,166,525 - Rru_A0980 0.61 +1.2
1,166,525 - Rru_A0980 0.61 -1.4
1,166,584 + Rru_A0980 0.67 -3.3
1,166,585 - Rru_A0980 0.67 +2.4
1,166,827 + +0.3
1,166,828 - +0.3
1,166,828 - +0.7

Or see this region's nucleotide sequence