Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0790 and Rru_A0791 are separated by 47 nucleotides Rru_A0791 and Rru_A0792 are separated by 309 nucleotides
Rru_A0790: Rru_A0790 - Phenylacetate--CoA ligase (NCBI), at 942,837 to 944,213
_A0790
Rru_A0791: Rru_A0791 - NLPA lipoprotein (NCBI), at 944,261 to 945,049
_A0791
Rru_A0792: Rru_A0792 - Serine O-acetyltransferase (NCBI), at 945,359 to 946,225
_A0792
Position (kb) 944
945
946 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 943.297 kb on - strand, within Rru_A0790 at 943.467 kb on + strand, within Rru_A0790 at 943.468 kb on - strand, within Rru_A0790 at 943.608 kb on + strand, within Rru_A0790 at 943.694 kb on + strand, within Rru_A0790 at 943.694 kb on + strand, within Rru_A0790 at 943.694 kb on + strand, within Rru_A0790 at 943.695 kb on - strand, within Rru_A0790 at 943.695 kb on - strand, within Rru_A0790 at 943.981 kb on - strand, within Rru_A0790 at 944.165 kb on + strand at 944.366 kb on + strand, within Rru_A0791 at 944.367 kb on - strand, within Rru_A0791 at 944.367 kb on - strand, within Rru_A0791 at 944.384 kb on + strand, within Rru_A0791 at 944.384 kb on + strand, within Rru_A0791 at 944.384 kb on + strand, within Rru_A0791 at 944.384 kb on + strand, within Rru_A0791 at 944.384 kb on + strand, within Rru_A0791 at 944.384 kb on + strand, within Rru_A0791 at 944.385 kb on - strand, within Rru_A0791 at 944.447 kb on + strand, within Rru_A0791 at 944.448 kb on - strand, within Rru_A0791 at 944.513 kb on + strand, within Rru_A0791 at 944.514 kb on - strand, within Rru_A0791 at 944.543 kb on + strand, within Rru_A0791 at 944.543 kb on + strand, within Rru_A0791 at 944.544 kb on - strand, within Rru_A0791 at 944.945 kb on - strand, within Rru_A0791 at 944.969 kb on + strand, within Rru_A0791 at 944.970 kb on - strand, within Rru_A0791 at 945.367 kb on + strand at 945.367 kb on + strand at 945.367 kb on + strand at 945.367 kb on + strand at 945.368 kb on - strand at 945.369 kb on + strand at 945.369 kb on + strand at 945.369 kb on + strand at 945.384 kb on + strand at 945.384 kb on + strand at 945.385 kb on - strand at 945.385 kb on - strand at 945.385 kb on - strand at 945.533 kb on - strand, within Rru_A0792 at 945.855 kb on + strand, within Rru_A0792 at 945.855 kb on + strand, within Rru_A0792 at 945.856 kb on - strand, within Rru_A0792
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 943,297 - Rru_A0790 0.33 -0.9 943,467 + Rru_A0790 0.46 -0.2 943,468 - Rru_A0790 0.46 +2.4 943,608 + Rru_A0790 0.56 +0.1 943,694 + Rru_A0790 0.62 -0.6 943,694 + Rru_A0790 0.62 -0.8 943,694 + Rru_A0790 0.62 -4.0 943,695 - Rru_A0790 0.62 -0.8 943,695 - Rru_A0790 0.62 -0.3 943,981 - Rru_A0790 0.83 -0.2 944,165 + +0.2 944,366 + Rru_A0791 0.13 -0.7 944,367 - Rru_A0791 0.13 -0.5 944,367 - Rru_A0791 0.13 +0.2 944,384 + Rru_A0791 0.16 -0.7 944,384 + Rru_A0791 0.16 -0.2 944,384 + Rru_A0791 0.16 -0.1 944,384 + Rru_A0791 0.16 -0.0 944,384 + Rru_A0791 0.16 -0.3 944,384 + Rru_A0791 0.16 -0.0 944,385 - Rru_A0791 0.16 +0.6 944,447 + Rru_A0791 0.24 +0.6 944,448 - Rru_A0791 0.24 -1.6 944,513 + Rru_A0791 0.32 -0.2 944,514 - Rru_A0791 0.32 +0.3 944,543 + Rru_A0791 0.36 -1.1 944,543 + Rru_A0791 0.36 -0.6 944,544 - Rru_A0791 0.36 -0.5 944,945 - Rru_A0791 0.87 -0.5 944,969 + Rru_A0791 0.90 -0.4 944,970 - Rru_A0791 0.90 -0.3 945,367 + -0.5 945,367 + -0.2 945,367 + +0.0 945,367 + +0.0 945,368 - +0.6 945,369 + -0.1 945,369 + -0.5 945,369 + +0.2 945,384 + +1.0 945,384 + -1.2 945,385 - -3.3 945,385 - +0.1 945,385 - -0.3 945,533 - Rru_A0792 0.20 -1.1 945,855 + Rru_A0792 0.57 -1.8 945,855 + Rru_A0792 0.57 +0.4 945,856 - Rru_A0792 0.57 -0.3
Or see this region's nucleotide sequence