Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0704 and Rru_A0705 are separated by 191 nucleotides Rru_A0705 and Rru_A0706 are separated by 85 nucleotides Rru_A0706 and Rru_A0707 are separated by 46 nucleotides Rru_A0707 and Rru_A0708 are separated by 118 nucleotides
Rru_A0704: Rru_A0704 - Molybdenum ABC transporter, periplasmic binding protein (NCBI), at 832,762 to 833,538
_A0704
Rru_A0705: Rru_A0705 - Glutaredoxin-related protein (NCBI), at 833,730 to 834,059
_A0705
Rru_A0706: Rru_A0706 - RarD protein (NCBI), at 834,145 to 835,077
_A0706
Rru_A0707: Rru_A0707 - BolA-like protein (NCBI), at 835,124 to 835,357
_A0707
Rru_A0708: Rru_A0708 - Phosphoribosylformylglycinamidine synthase II (NCBI), at 835,476 to 837,698
_A0708
Position (kb) 834
835
836 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 833.273 kb on + strand, within Rru_A0704 at 833.274 kb on - strand, within Rru_A0704 at 833.274 kb on - strand, within Rru_A0704 at 833.274 kb on - strand, within Rru_A0704 at 833.274 kb on - strand, within Rru_A0704 at 833.274 kb on - strand, within Rru_A0704 at 833.274 kb on - strand, within Rru_A0704 at 833.451 kb on + strand, within Rru_A0704 at 833.452 kb on - strand, within Rru_A0704 at 833.452 kb on - strand, within Rru_A0704 at 833.533 kb on - strand at 833.614 kb on - strand at 834.107 kb on - strand at 834.191 kb on + strand at 834.299 kb on + strand, within Rru_A0706 at 834.300 kb on - strand, within Rru_A0706 at 834.300 kb on - strand, within Rru_A0706 at 834.300 kb on - strand, within Rru_A0706 at 834.530 kb on - strand, within Rru_A0706 at 834.551 kb on + strand, within Rru_A0706 at 834.552 kb on - strand, within Rru_A0706 at 834.552 kb on - strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.722 kb on + strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.723 kb on - strand, within Rru_A0706 at 834.726 kb on - strand, within Rru_A0706 at 834.886 kb on - strand, within Rru_A0706 at 834.886 kb on - strand, within Rru_A0706 at 834.886 kb on - strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.888 kb on + strand, within Rru_A0706 at 834.889 kb on - strand, within Rru_A0706 at 834.889 kb on - strand, within Rru_A0706 at 834.889 kb on - strand, within Rru_A0706 at 834.993 kb on - strand at 835.096 kb on + strand at 835.400 kb on - strand at 835.400 kb on - strand at 835.489 kb on + strand at 835.490 kb on - strand at 835.663 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 833,273 + Rru_A0704 0.66 -1.4 833,274 - Rru_A0704 0.66 -0.1 833,274 - Rru_A0704 0.66 -0.7 833,274 - Rru_A0704 0.66 +0.0 833,274 - Rru_A0704 0.66 -0.0 833,274 - Rru_A0704 0.66 -0.3 833,274 - Rru_A0704 0.66 +0.9 833,451 + Rru_A0704 0.89 +0.2 833,452 - Rru_A0704 0.89 +0.1 833,452 - Rru_A0704 0.89 +0.2 833,533 - -1.2 833,614 - -0.3 834,107 - -0.2 834,191 + -0.1 834,299 + Rru_A0706 0.17 -1.0 834,300 - Rru_A0706 0.17 -0.5 834,300 - Rru_A0706 0.17 -1.4 834,300 - Rru_A0706 0.17 -0.8 834,530 - Rru_A0706 0.41 +0.9 834,551 + Rru_A0706 0.44 +0.4 834,552 - Rru_A0706 0.44 -4.1 834,552 - Rru_A0706 0.44 +0.1 834,722 + Rru_A0706 0.62 -1.1 834,722 + Rru_A0706 0.62 -0.6 834,722 + Rru_A0706 0.62 -0.1 834,722 + Rru_A0706 0.62 -0.5 834,723 - Rru_A0706 0.62 -1.8 834,723 - Rru_A0706 0.62 +0.3 834,723 - Rru_A0706 0.62 +0.7 834,723 - Rru_A0706 0.62 +1.1 834,723 - Rru_A0706 0.62 -0.8 834,726 - Rru_A0706 0.62 +0.0 834,886 - Rru_A0706 0.79 -0.0 834,886 - Rru_A0706 0.79 -0.2 834,886 - Rru_A0706 0.79 +0.2 834,888 + Rru_A0706 0.80 -1.0 834,888 + Rru_A0706 0.80 -0.3 834,888 + Rru_A0706 0.80 -0.6 834,888 + Rru_A0706 0.80 +0.2 834,889 - Rru_A0706 0.80 -0.5 834,889 - Rru_A0706 0.80 -3.5 834,889 - Rru_A0706 0.80 -0.2 834,993 - +0.2 835,096 + -0.8 835,400 - +0.3 835,400 - +0.0 835,489 + -0.4 835,490 - +0.2 835,663 + -0.5
Or see this region's nucleotide sequence