Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0616 and Rru_A0617 are separated by 15 nucleotides Rru_A0617 and Rru_A0618 are separated by 25 nucleotides Rru_A0618 and Rru_A0619 overlap by 13 nucleotides Rru_A0619 and Rru_A0620 overlap by 1 nucleotides
Rru_A0616: Rru_A0616 - photosynthetic complex assembly protein (NCBI), at 730,555 to 731,229
_A0616
Rru_A0617: Rru_A0617 - Photosynthetic reaction center, H-chain (NCBI), at 731,245 to 732,018
_A0617
Rru_A0618: Rru_A0618 - PUCC protein (NCBI), at 732,044 to 733,486
_A0618
Rru_A0619: Rru_A0619 - Magnesium protoporphyrin O-methyltransferase (NCBI), at 733,474 to 734,184
_A0619
Rru_A0620: Rru_A0620 - Light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein (NCBI), at 734,184 to 735,071
_A0620
Position (kb) 732
733
734 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 731.051 kb on + strand, within Rru_A0616 at 731.051 kb on + strand, within Rru_A0616 at 731.052 kb on - strand, within Rru_A0616 at 731.093 kb on + strand, within Rru_A0616 at 731.246 kb on + strand at 731.247 kb on - strand at 731.247 kb on - strand at 731.279 kb on + strand at 731.279 kb on + strand at 731.282 kb on + strand at 731.283 kb on - strand at 731.792 kb on + strand, within Rru_A0617 at 731.793 kb on - strand, within Rru_A0617 at 731.930 kb on + strand, within Rru_A0617 at 731.931 kb on - strand, within Rru_A0617 at 731.931 kb on - strand, within Rru_A0617 at 731.993 kb on + strand at 731.993 kb on + strand at 732.012 kb on + strand at 732.013 kb on - strand at 732.013 kb on - strand at 732.013 kb on - strand at 732.045 kb on + strand at 732.046 kb on - strand at 732.142 kb on + strand at 732.142 kb on + strand at 732.142 kb on + strand at 732.142 kb on + strand at 732.162 kb on - strand at 732.162 kb on - strand at 732.630 kb on + strand, within Rru_A0618 at 732.630 kb on + strand, within Rru_A0618 at 732.631 kb on - strand, within Rru_A0618 at 732.631 kb on - strand, within Rru_A0618 at 732.936 kb on + strand, within Rru_A0618 at 732.936 kb on + strand, within Rru_A0618 at 732.936 kb on + strand, within Rru_A0618 at 732.937 kb on - strand, within Rru_A0618 at 732.937 kb on - strand, within Rru_A0618 at 732.937 kb on - strand, within Rru_A0618 at 733.168 kb on + strand, within Rru_A0618 at 733.168 kb on + strand, within Rru_A0618 at 733.168 kb on + strand, within Rru_A0618 at 733.168 kb on + strand, within Rru_A0618 at 733.168 kb on + strand, within Rru_A0618 at 733.168 kb on + strand, within Rru_A0618 at 733.168 kb on + strand, within Rru_A0618 at 733.169 kb on - strand, within Rru_A0618 at 733.169 kb on - strand, within Rru_A0618 at 733.169 kb on - strand, within Rru_A0618 at 733.169 kb on - strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.170 kb on + strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.171 kb on - strand, within Rru_A0618 at 733.518 kb on - strand at 733.518 kb on - strand at 733.518 kb on - strand at 733.518 kb on - strand at 733.770 kb on - strand, within Rru_A0619 at 733.770 kb on - strand, within Rru_A0619 at 733.914 kb on + strand, within Rru_A0619 at 734.139 kb on - strand at 734.168 kb on + strand at 734.168 kb on + strand at 734.168 kb on + strand at 734.168 kb on + strand at 734.169 kb on - strand at 734.169 kb on - strand at 734.220 kb on + strand at 734.221 kb on - strand at 734.221 kb on - strand at 734.281 kb on + strand, within Rru_A0620 at 734.282 kb on - strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620 at 734.476 kb on + strand, within Rru_A0620
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 731,051 + Rru_A0616 0.73 -1.6 731,051 + Rru_A0616 0.73 -1.9 731,052 - Rru_A0616 0.74 -0.7 731,093 + Rru_A0616 0.80 +0.3 731,246 + -2.0 731,247 - -3.8 731,247 - -2.5 731,279 + -4.5 731,279 + -3.1 731,282 + -2.7 731,283 - -3.4 731,792 + Rru_A0617 0.71 -3.4 731,793 - Rru_A0617 0.71 -2.6 731,930 + Rru_A0617 0.89 -2.5 731,931 - Rru_A0617 0.89 -3.6 731,931 - Rru_A0617 0.89 -2.9 731,993 + -3.6 731,993 + -4.6 732,012 + -3.5 732,013 - -2.4 732,013 - -2.2 732,013 - -2.0 732,045 + -2.2 732,046 - -1.2 732,142 + -5.0 732,142 + -2.1 732,142 + -1.7 732,142 + -3.8 732,162 - +0.7 732,162 - +0.7 732,630 + Rru_A0618 0.41 -3.7 732,630 + Rru_A0618 0.41 -1.6 732,631 - Rru_A0618 0.41 -0.8 732,631 - Rru_A0618 0.41 +1.3 732,936 + Rru_A0618 0.62 -3.0 732,936 + Rru_A0618 0.62 -3.8 732,936 + Rru_A0618 0.62 -1.4 732,937 - Rru_A0618 0.62 -0.1 732,937 - Rru_A0618 0.62 -1.1 732,937 - Rru_A0618 0.62 +1.5 733,168 + Rru_A0618 0.78 -2.9 733,168 + Rru_A0618 0.78 -3.7 733,168 + Rru_A0618 0.78 -4.6 733,168 + Rru_A0618 0.78 -3.1 733,168 + Rru_A0618 0.78 -3.3 733,168 + Rru_A0618 0.78 -2.5 733,168 + Rru_A0618 0.78 -1.9 733,169 - Rru_A0618 0.78 +0.9 733,169 - Rru_A0618 0.78 +0.6 733,169 - Rru_A0618 0.78 -1.7 733,169 - Rru_A0618 0.78 -1.7 733,170 + Rru_A0618 0.78 -3.4 733,170 + Rru_A0618 0.78 -2.0 733,170 + Rru_A0618 0.78 -2.2 733,170 + Rru_A0618 0.78 -2.1 733,170 + Rru_A0618 0.78 -1.6 733,170 + Rru_A0618 0.78 -5.9 733,170 + Rru_A0618 0.78 -2.5 733,170 + Rru_A0618 0.78 -3.4 733,170 + Rru_A0618 0.78 -4.2 733,170 + Rru_A0618 0.78 -1.5 733,170 + Rru_A0618 0.78 -3.0 733,171 - Rru_A0618 0.78 +1.8 733,171 - Rru_A0618 0.78 -1.3 733,171 - Rru_A0618 0.78 +3.0 733,171 - Rru_A0618 0.78 -0.3 733,171 - Rru_A0618 0.78 -0.9 733,171 - Rru_A0618 0.78 -1.0 733,171 - Rru_A0618 0.78 +0.3 733,171 - Rru_A0618 0.78 +0.0 733,171 - Rru_A0618 0.78 -1.6 733,518 - -0.8 733,518 - -3.8 733,518 - -2.5 733,518 - -2.5 733,770 - Rru_A0619 0.42 -1.3 733,770 - Rru_A0619 0.42 -4.0 733,914 + Rru_A0619 0.62 -3.0 734,139 - -2.1 734,168 + -2.2 734,168 + -0.7 734,168 + -3.8 734,168 + -4.5 734,169 - -3.1 734,169 - -1.6 734,220 + +1.6 734,221 - -0.5 734,221 - -0.9 734,281 + Rru_A0620 0.11 -4.5 734,282 - Rru_A0620 0.11 -4.1 734,476 + Rru_A0620 0.33 -1.4 734,476 + Rru_A0620 0.33 -2.7 734,476 + Rru_A0620 0.33 -0.7 734,476 + Rru_A0620 0.33 -5.1
Or see this region's nucleotide sequence