Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0551 and Rru_A0552 overlap by 122 nucleotides Rru_A0552 and Rru_A0553 are separated by 264 nucleotides Rru_A0553 and Rru_A0554 are separated by 175 nucleotides
Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941
_A0551
Rru_A0552: Rru_A0552 - GCN5-related N-acetyltransferase (NCBI), at 652,820 to 653,449
_A0552
Rru_A0553: Rru_A0553 - Response Regulator Receiver Signal Transduction Histidine Kinase (NCBI), at 653,714 to 655,036
_A0553
Rru_A0554: Rru_A0554 - Rh-like protein/ammonium transporter (NCBI), at 655,212 to 656,531
_A0554
Position (kb) 653
654
655
656 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 652.761 kb on - strand, within Rru_A0551 at 652.761 kb on - strand, within Rru_A0551 at 652.821 kb on + strand at 652.821 kb on + strand at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.246 kb on - strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.247 kb on + strand, within Rru_A0552 at 653.248 kb on - strand, within Rru_A0552 at 653.248 kb on - strand, within Rru_A0552 at 653.485 kb on + strand at 653.485 kb on + strand at 653.485 kb on + strand at 653.486 kb on - strand at 653.486 kb on - strand at 653.537 kb on + strand at 653.537 kb on + strand at 653.568 kb on + strand at 653.568 kb on + strand at 653.569 kb on - strand at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.319 kb on + strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.320 kb on - strand, within Rru_A0553 at 654.321 kb on + strand, within Rru_A0553 at 654.322 kb on - strand, within Rru_A0553 at 654.555 kb on + strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.556 kb on - strand, within Rru_A0553 at 654.621 kb on + strand, within Rru_A0553 at 654.637 kb on - strand, within Rru_A0553 at 655.084 kb on - strand at 655.179 kb on - strand at 655.213 kb on + strand at 655.687 kb on + strand, within Rru_A0554 at 655.687 kb on + strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.688 kb on - strand, within Rru_A0554 at 655.805 kb on + strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554 at 655.806 kb on - strand, within Rru_A0554
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 652,761 - Rru_A0551 0.89 +0.3 652,761 - Rru_A0551 0.89 -0.5 652,821 + +0.9 652,821 + +0.1 653,246 - Rru_A0552 0.68 -0.1 653,246 - Rru_A0552 0.68 +0.6 653,246 - Rru_A0552 0.68 +0.1 653,246 - Rru_A0552 0.68 -1.1 653,246 - Rru_A0552 0.68 +0.5 653,246 - Rru_A0552 0.68 -0.9 653,246 - Rru_A0552 0.68 +0.4 653,247 + Rru_A0552 0.68 -0.0 653,247 + Rru_A0552 0.68 -0.4 653,247 + Rru_A0552 0.68 +1.0 653,247 + Rru_A0552 0.68 +0.1 653,247 + Rru_A0552 0.68 -0.5 653,247 + Rru_A0552 0.68 -0.8 653,247 + Rru_A0552 0.68 -0.1 653,247 + Rru_A0552 0.68 +0.9 653,247 + Rru_A0552 0.68 +0.2 653,248 - Rru_A0552 0.68 +1.0 653,248 - Rru_A0552 0.68 -1.0 653,485 + -0.1 653,485 + +0.4 653,485 + +0.1 653,486 - -0.0 653,486 - +0.5 653,537 + +1.2 653,537 + -0.0 653,568 + +0.9 653,568 + +0.9 653,569 - +0.2 654,319 + Rru_A0553 0.46 +0.1 654,319 + Rru_A0553 0.46 +0.5 654,319 + Rru_A0553 0.46 +3.4 654,319 + Rru_A0553 0.46 -0.6 654,319 + Rru_A0553 0.46 +3.0 654,319 + Rru_A0553 0.46 -0.8 654,319 + Rru_A0553 0.46 +0.5 654,319 + Rru_A0553 0.46 +0.1 654,320 - Rru_A0553 0.46 +0.1 654,320 - Rru_A0553 0.46 -0.2 654,320 - Rru_A0553 0.46 +0.9 654,321 + Rru_A0553 0.46 -0.2 654,322 - Rru_A0553 0.46 -0.3 654,555 + Rru_A0553 0.64 +0.2 654,556 - Rru_A0553 0.64 +1.4 654,556 - Rru_A0553 0.64 +0.3 654,556 - Rru_A0553 0.64 -0.3 654,621 + Rru_A0553 0.69 -0.2 654,637 - Rru_A0553 0.70 -0.4 655,084 - -0.0 655,179 - -3.8 655,213 + +0.4 655,687 + Rru_A0554 0.36 +1.5 655,687 + Rru_A0554 0.36 +0.1 655,688 - Rru_A0554 0.36 +1.6 655,688 - Rru_A0554 0.36 +1.4 655,688 - Rru_A0554 0.36 -0.4 655,688 - Rru_A0554 0.36 +0.4 655,805 + Rru_A0554 0.45 -0.6 655,806 - Rru_A0554 0.45 -0.3 655,806 - Rru_A0554 0.45 -0.4
Or see this region's nucleotide sequence