Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0531 and Rru_A0532 are separated by 92 nucleotides Rru_A0532 and Rru_A0533 are separated by 47 nucleotides Rru_A0533 and Rru_A0534 are separated by 219 nucleotides Rru_A0534 and Rru_A0535 are separated by 109 nucleotides
Rru_A0531: Rru_A0531 - hypothetical protein (NCBI), at 625,425 to 627,191
_A0531
Rru_A0532: Rru_A0532 - Cobyrinic acid a,c-diamide synthase (NCBI), at 627,284 to 628,057
_A0532
Rru_A0533: Rru_A0533 - GTP-binding signal recognition particle SRP54, G-domain (NCBI), at 628,105 to 629,211
_A0533
Rru_A0534: Rru_A0534 - hypothetical protein (NCBI), at 629,431 to 629,958
_A0534
Rru_A0535: Rru_A0535 - Protein of unknown function DUF6, transmembrane (NCBI), at 630,068 to 630,982
_A0535
Position (kb) 628
629
630 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 627.285 kb on + strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.286 kb on - strand at 627.469 kb on - strand, within Rru_A0532 at 627.469 kb on - strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.564 kb on + strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.565 kb on - strand, within Rru_A0532 at 627.647 kb on - strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 627.684 kb on + strand, within Rru_A0532 at 628.015 kb on + strand at 628.015 kb on + strand at 628.015 kb on + strand at 628.016 kb on - strand at 628.016 kb on - strand at 628.121 kb on + strand at 628.128 kb on + strand at 628.129 kb on - strand at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.455 kb on + strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.456 kb on - strand, within Rru_A0533 at 628.469 kb on + strand, within Rru_A0533 at 628.469 kb on + strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.470 kb on - strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.542 kb on + strand, within Rru_A0533 at 628.543 kb on - strand, within Rru_A0533 at 628.587 kb on + strand, within Rru_A0533 at 628.588 kb on - strand, within Rru_A0533 at 628.828 kb on + strand, within Rru_A0533 at 628.829 kb on - strand, within Rru_A0533 at 628.829 kb on - strand, within Rru_A0533 at 629.114 kb on + strand at 629.114 kb on + strand at 629.114 kb on + strand at 629.114 kb on + strand at 629.115 kb on - strand at 629.115 kb on - strand at 629.115 kb on - strand at 629.115 kb on - strand at 629.122 kb on - strand at 629.225 kb on + strand at 629.226 kb on - strand at 629.242 kb on - strand at 629.308 kb on + strand at 629.309 kb on - strand at 629.309 kb on - strand at 629.309 kb on - strand at 629.316 kb on + strand at 629.316 kb on + strand at 629.317 kb on - strand at 629.361 kb on - strand at 629.416 kb on + strand at 629.416 kb on + strand at 629.417 kb on - strand at 629.417 kb on - strand at 629.417 kb on - strand at 629.522 kb on + strand, within Rru_A0534 at 629.522 kb on + strand, within Rru_A0534 at 629.522 kb on + strand, within Rru_A0534 at 629.523 kb on - strand, within Rru_A0534 at 629.590 kb on - strand, within Rru_A0534 at 629.598 kb on - strand, within Rru_A0534 at 629.963 kb on - strand at 629.976 kb on - strand at 630.015 kb on + strand at 630.043 kb on + strand at 630.043 kb on + strand at 630.069 kb on + strand at 630.069 kb on + strand at 630.070 kb on - strand at 630.172 kb on - strand, within Rru_A0535 at 630.172 kb on - strand, within Rru_A0535 at 630.182 kb on + strand, within Rru_A0535 at 630.191 kb on + strand, within Rru_A0535 at 630.191 kb on + strand, within Rru_A0535
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 627,285 + +0.4 627,286 - -1.2 627,286 - -0.4 627,286 - +0.0 627,286 - +0.3 627,469 - Rru_A0532 0.24 +0.9 627,469 - Rru_A0532 0.24 -0.3 627,564 + Rru_A0532 0.36 -1.1 627,564 + Rru_A0532 0.36 +0.7 627,564 + Rru_A0532 0.36 +0.7 627,565 - Rru_A0532 0.36 -1.0 627,565 - Rru_A0532 0.36 +1.6 627,565 - Rru_A0532 0.36 -0.7 627,647 - Rru_A0532 0.47 +0.5 627,684 + Rru_A0532 0.52 +0.3 627,684 + Rru_A0532 0.52 -0.0 628,015 + -1.4 628,015 + +0.3 628,015 + -2.1 628,016 - +0.3 628,016 - -0.3 628,121 + +0.3 628,128 + +0.1 628,129 - +0.7 628,455 + Rru_A0533 0.32 +0.4 628,455 + Rru_A0533 0.32 -0.1 628,455 + Rru_A0533 0.32 +1.0 628,455 + Rru_A0533 0.32 +0.9 628,455 + Rru_A0533 0.32 -0.1 628,456 - Rru_A0533 0.32 +1.2 628,456 - Rru_A0533 0.32 -1.7 628,456 - Rru_A0533 0.32 -2.0 628,469 + Rru_A0533 0.33 -0.4 628,469 + Rru_A0533 0.33 -0.5 628,470 - Rru_A0533 0.33 -2.6 628,470 - Rru_A0533 0.33 -0.1 628,470 - Rru_A0533 0.33 -0.2 628,542 + Rru_A0533 0.39 -1.2 628,542 + Rru_A0533 0.39 -1.2 628,542 + Rru_A0533 0.39 -1.3 628,543 - Rru_A0533 0.40 -0.3 628,587 + Rru_A0533 0.44 -0.3 628,588 - Rru_A0533 0.44 +0.5 628,828 + Rru_A0533 0.65 -0.4 628,829 - Rru_A0533 0.65 +0.4 628,829 - Rru_A0533 0.65 -0.1 629,114 + -0.5 629,114 + +0.2 629,114 + +0.2 629,114 + +0.3 629,115 - -1.4 629,115 - -0.4 629,115 - -0.2 629,115 - +0.1 629,122 - +0.0 629,225 + +0.2 629,226 - -0.5 629,242 - +0.1 629,308 + -0.1 629,309 - -0.5 629,309 - +1.4 629,309 - -0.9 629,316 + +0.1 629,316 + -0.6 629,317 - -1.4 629,361 - -0.9 629,416 + -3.7 629,416 + -0.4 629,417 - -1.3 629,417 - +1.2 629,417 - +0.5 629,522 + Rru_A0534 0.17 -0.4 629,522 + Rru_A0534 0.17 +0.1 629,522 + Rru_A0534 0.17 +0.3 629,523 - Rru_A0534 0.17 -0.8 629,590 - Rru_A0534 0.30 +0.1 629,598 - Rru_A0534 0.32 +3.3 629,963 - -0.6 629,976 - +0.1 630,015 + +0.6 630,043 + -0.4 630,043 + +1.1 630,069 + -0.3 630,069 + -0.1 630,070 - +0.3 630,172 - Rru_A0535 0.11 +0.4 630,172 - Rru_A0535 0.11 -0.0 630,182 + Rru_A0535 0.12 -1.0 630,191 + Rru_A0535 0.13 +0.0 630,191 + Rru_A0535 0.13 +0.6
Or see this region's nucleotide sequence