Experiment: Valeric 25 mM; anaerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0449 and Rru_A0450 are separated by 242 nucleotides Rru_A0450 and Rru_A0451 are separated by 96 nucleotides Rru_A0451 and Rru_A0452 are separated by 125 nucleotides Rru_A0452 and 11438694 are separated by 67 nucleotides
Rru_A0449: Rru_A0449 - Radical SAM (NCBI), at 527,207 to 528,319
_A0449
Rru_A0450: Rru_A0450 - Uncharacterized protein predicted to be involved in DNA repair-like (NCBI), at 528,562 to 529,083
_A0450
Rru_A0451: Rru_A0451 - hypothetical protein (NCBI), at 529,180 to 529,524
_A0451
Rru_A0452: Rru_A0452 - Protein of unknown function DUF196 (NCBI), at 529,650 to 529,988
_A0452
11438694 - no description, at 530,056 to 530,091
11438694
11581057 - no description, at 530,056 to 530,091
11581057
11723449 - no description, at 530,056 to 530,091
11723449
Position (kb) 528
529
530 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 527.612 kb on + strand, within Rru_A0449 at 527.612 kb on + strand, within Rru_A0449 at 527.612 kb on + strand, within Rru_A0449 at 527.612 kb on + strand, within Rru_A0449 at 527.612 kb on + strand, within Rru_A0449 at 527.613 kb on - strand, within Rru_A0449 at 527.613 kb on - strand, within Rru_A0449 at 527.614 kb on + strand, within Rru_A0449 at 527.614 kb on + strand, within Rru_A0449 at 527.614 kb on + strand, within Rru_A0449 at 527.614 kb on + strand, within Rru_A0449 at 527.614 kb on + strand, within Rru_A0449 at 527.615 kb on - strand, within Rru_A0449 at 527.615 kb on - strand, within Rru_A0449 at 527.705 kb on + strand, within Rru_A0449 at 527.706 kb on - strand, within Rru_A0449 at 527.706 kb on - strand, within Rru_A0449 at 527.707 kb on + strand, within Rru_A0449 at 527.708 kb on - strand, within Rru_A0449 at 528.083 kb on + strand, within Rru_A0449 at 528.083 kb on + strand, within Rru_A0449 at 528.083 kb on + strand, within Rru_A0449 at 528.084 kb on - strand, within Rru_A0449 at 528.182 kb on + strand, within Rru_A0449 at 528.402 kb on + strand at 528.402 kb on + strand at 528.403 kb on - strand at 528.422 kb on + strand at 528.422 kb on + strand at 528.423 kb on - strand at 528.423 kb on - strand at 528.430 kb on - strand at 528.487 kb on + strand at 528.487 kb on + strand at 528.487 kb on + strand at 528.487 kb on + strand at 528.488 kb on - strand at 528.638 kb on + strand, within Rru_A0450 at 528.638 kb on + strand, within Rru_A0450 at 528.639 kb on - strand, within Rru_A0450 at 528.639 kb on - strand, within Rru_A0450 at 528.639 kb on - strand, within Rru_A0450 at 528.639 kb on - strand, within Rru_A0450 at 528.639 kb on - strand, within Rru_A0450 at 528.639 kb on - strand, within Rru_A0450 at 529.022 kb on + strand, within Rru_A0450 at 529.023 kb on - strand, within Rru_A0450 at 529.074 kb on - strand at 529.079 kb on - strand at 529.106 kb on + strand at 529.107 kb on - strand at 529.107 kb on - strand at 529.514 kb on + strand at 529.554 kb on + strand at 529.555 kb on - strand at 529.689 kb on + strand, within Rru_A0452 at 529.689 kb on + strand, within Rru_A0452 at 529.690 kb on - strand, within Rru_A0452 at 529.690 kb on - strand, within Rru_A0452 at 529.690 kb on - strand, within Rru_A0452 at 529.780 kb on - strand, within Rru_A0452 at 529.780 kb on - strand, within Rru_A0452 at 529.788 kb on + strand, within Rru_A0452 at 529.789 kb on - strand, within Rru_A0452 at 529.789 kb on - strand, within Rru_A0452 at 529.789 kb on - strand, within Rru_A0452 at 529.827 kb on + strand, within Rru_A0452 at 529.877 kb on - strand, within Rru_A0452 at 529.933 kb on - strand, within Rru_A0452 at 529.933 kb on - strand, within Rru_A0452 at 529.974 kb on + strand at 529.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Valeric 25 mM; anaerobic remove 527,612 + Rru_A0449 0.36 +0.6 527,612 + Rru_A0449 0.36 +0.9 527,612 + Rru_A0449 0.36 +0.0 527,612 + Rru_A0449 0.36 +0.4 527,612 + Rru_A0449 0.36 -1.8 527,613 - Rru_A0449 0.36 -0.5 527,613 - Rru_A0449 0.36 -1.4 527,614 + Rru_A0449 0.37 +0.1 527,614 + Rru_A0449 0.37 +0.0 527,614 + Rru_A0449 0.37 -1.8 527,614 + Rru_A0449 0.37 +0.3 527,614 + Rru_A0449 0.37 +2.1 527,615 - Rru_A0449 0.37 +0.3 527,615 - Rru_A0449 0.37 -0.1 527,705 + Rru_A0449 0.45 -0.6 527,706 - Rru_A0449 0.45 +0.5 527,706 - Rru_A0449 0.45 -0.6 527,707 + Rru_A0449 0.45 -0.7 527,708 - Rru_A0449 0.45 -0.6 528,083 + Rru_A0449 0.79 -0.4 528,083 + Rru_A0449 0.79 -0.1 528,083 + Rru_A0449 0.79 -0.4 528,084 - Rru_A0449 0.79 -0.5 528,182 + Rru_A0449 0.88 -0.3 528,402 + -1.4 528,402 + -3.2 528,403 - -0.0 528,422 + +0.7 528,422 + -0.9 528,423 - -3.2 528,423 - -0.3 528,430 - -0.2 528,487 + +1.1 528,487 + +0.5 528,487 + +0.5 528,487 + -0.4 528,488 - -0.1 528,638 + Rru_A0450 0.15 +0.5 528,638 + Rru_A0450 0.15 +0.9 528,639 - Rru_A0450 0.15 -0.0 528,639 - Rru_A0450 0.15 -0.3 528,639 - Rru_A0450 0.15 +0.3 528,639 - Rru_A0450 0.15 -0.6 528,639 - Rru_A0450 0.15 -1.0 528,639 - Rru_A0450 0.15 +0.3 529,022 + Rru_A0450 0.88 +2.3 529,023 - Rru_A0450 0.88 +0.3 529,074 - +0.2 529,079 - +0.4 529,106 + -0.2 529,107 - -0.8 529,107 - -0.5 529,514 + +0.5 529,554 + +1.7 529,555 - +0.4 529,689 + Rru_A0452 0.12 -1.0 529,689 + Rru_A0452 0.12 -1.0 529,690 - Rru_A0452 0.12 -0.1 529,690 - Rru_A0452 0.12 +0.2 529,690 - Rru_A0452 0.12 +0.2 529,780 - Rru_A0452 0.38 -0.3 529,780 - Rru_A0452 0.38 -0.9 529,788 + Rru_A0452 0.41 -0.8 529,789 - Rru_A0452 0.41 +0.3 529,789 - Rru_A0452 0.41 +0.3 529,789 - Rru_A0452 0.41 -0.1 529,827 + Rru_A0452 0.52 -0.4 529,877 - Rru_A0452 0.67 -0.2 529,933 - Rru_A0452 0.83 -1.6 529,933 - Rru_A0452 0.83 -0.4 529,974 + -0.1 529,975 - -0.1
Or see this region's nucleotide sequence