Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36355

Experiment: L-Valine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS36350 and RR42_RS36355 are separated by 76 nucleotidesRR42_RS36355 and RR42_RS36360 are separated by 56 nucleotides RR42_RS36350: RR42_RS36350 - D-amino acid oxidase, at 3,606,997 to 3,608,097 _RS36350 RR42_RS36355: RR42_RS36355 - (2Fe-2S)-binding protein, at 3,608,174 to 3,608,407 _RS36355 RR42_RS36360: RR42_RS36360 - pyridine nucleotide-disulfide oxidoreductase, at 3,608,464 to 3,609,705 _RS36360 Position (kb) 3608 3609Strain fitness (log2 ratio) -1 0 1at 3607.861 kb on + strand, within RR42_RS36350at 3607.862 kb on - strand, within RR42_RS36350at 3607.862 kb on - strand, within RR42_RS36350at 3608.243 kb on + strand, within RR42_RS36355at 3608.244 kb on - strand, within RR42_RS36355at 3608.245 kb on + strand, within RR42_RS36355at 3608.246 kb on - strand, within RR42_RS36355at 3608.831 kb on + strand, within RR42_RS36360at 3608.832 kb on - strand, within RR42_RS36360at 3608.883 kb on - strand, within RR42_RS36360at 3608.883 kb on - strand, within RR42_RS36360at 3609.280 kb on + strand, within RR42_RS36360at 3609.280 kb on + strand, within RR42_RS36360

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
remove
3,607,861 + RR42_RS36350 0.78 -0.8
3,607,862 - RR42_RS36350 0.79 +0.0
3,607,862 - RR42_RS36350 0.79 +0.0
3,608,243 + RR42_RS36355 0.29 -1.6
3,608,244 - RR42_RS36355 0.30 +0.4
3,608,245 + RR42_RS36355 0.30 -1.2
3,608,246 - RR42_RS36355 0.31 -1.3
3,608,831 + RR42_RS36360 0.30 -0.1
3,608,832 - RR42_RS36360 0.30 -0.6
3,608,883 - RR42_RS36360 0.34 -1.0
3,608,883 - RR42_RS36360 0.34 +0.9
3,609,280 + RR42_RS36360 0.66 -0.1
3,609,280 + RR42_RS36360 0.66 +1.7

Or see this region's nucleotide sequence