Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26450 and RR42_RS26455 are separated by 44 nucleotides RR42_RS26455 and RR42_RS26460 are separated by 46 nucleotides RR42_RS26460 and RR42_RS26465 are separated by 230 nucleotides
RR42_RS26450: RR42_RS26450 - histidinol dehydrogenase, at 1,290,013 to 1,290,723
_RS26450
RR42_RS26455: RR42_RS26455 - amino acid ABC transporter ATP-binding protein, at 1,290,768 to 1,291,544
_RS26455
RR42_RS26460: RR42_RS26460 - ABC transporter permease, at 1,291,591 to 1,292,775
_RS26460
RR42_RS26465: RR42_RS26465 - MFS transporter, at 1,293,006 to 1,294,610
_RS26465
Position (kb)
1291
1292
1293 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1290.695 kb on + strand at 1290.696 kb on - strand at 1290.808 kb on + strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.956 kb on + strand, within RR42_RS26455 at 1291.664 kb on + strand at 1291.721 kb on + strand, within RR42_RS26460 at 1291.979 kb on + strand, within RR42_RS26460 at 1291.980 kb on - strand, within RR42_RS26460 at 1291.980 kb on - strand, within RR42_RS26460 at 1291.980 kb on - strand, within RR42_RS26460 at 1292.279 kb on + strand, within RR42_RS26460 at 1292.294 kb on + strand, within RR42_RS26460 at 1292.294 kb on + strand, within RR42_RS26460 at 1292.295 kb on - strand, within RR42_RS26460 at 1292.434 kb on - strand, within RR42_RS26460 at 1292.678 kb on + strand at 1292.749 kb on + strand at 1292.750 kb on - strand at 1292.987 kb on + strand at 1292.988 kb on - strand at 1293.103 kb on + strand at 1293.253 kb on + strand, within RR42_RS26465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 1,290,695 + +0.1 1,290,696 - +0.5 1,290,808 + +0.1 1,290,809 - -0.7 1,290,809 - +0.7 1,290,809 - +0.3 1,290,809 - -0.6 1,290,809 - +0.3 1,290,809 - -0.4 1,290,956 + RR42_RS26455 0.24 +0.7 1,291,664 + -0.3 1,291,721 + RR42_RS26460 0.11 +0.6 1,291,979 + RR42_RS26460 0.33 -2.7 1,291,980 - RR42_RS26460 0.33 +0.1 1,291,980 - RR42_RS26460 0.33 -0.8 1,291,980 - RR42_RS26460 0.33 -0.4 1,292,279 + RR42_RS26460 0.58 -2.8 1,292,294 + RR42_RS26460 0.59 -1.0 1,292,294 + RR42_RS26460 0.59 +0.2 1,292,295 - RR42_RS26460 0.59 -0.4 1,292,434 - RR42_RS26460 0.71 +0.7 1,292,678 + -0.6 1,292,749 + +0.1 1,292,750 - +0.7 1,292,987 + -0.3 1,292,988 - -0.3 1,293,103 + +0.3 1,293,253 + RR42_RS26465 0.15 -0.3
Or see this region's nucleotide sequence