Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26460

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26450 and RR42_RS26455 are separated by 44 nucleotidesRR42_RS26455 and RR42_RS26460 are separated by 46 nucleotidesRR42_RS26460 and RR42_RS26465 are separated by 230 nucleotides RR42_RS26450: RR42_RS26450 - histidinol dehydrogenase, at 1,290,013 to 1,290,723 _RS26450 RR42_RS26455: RR42_RS26455 - amino acid ABC transporter ATP-binding protein, at 1,290,768 to 1,291,544 _RS26455 RR42_RS26460: RR42_RS26460 - ABC transporter permease, at 1,291,591 to 1,292,775 _RS26460 RR42_RS26465: RR42_RS26465 - MFS transporter, at 1,293,006 to 1,294,610 _RS26465 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -3 -2 -1 0 1at 1290.695 kb on + strandat 1290.696 kb on - strandat 1290.808 kb on + strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.809 kb on - strandat 1290.956 kb on + strand, within RR42_RS26455at 1291.664 kb on + strandat 1291.721 kb on + strand, within RR42_RS26460at 1291.979 kb on + strand, within RR42_RS26460at 1291.980 kb on - strand, within RR42_RS26460at 1291.980 kb on - strand, within RR42_RS26460at 1291.980 kb on - strand, within RR42_RS26460at 1292.279 kb on + strand, within RR42_RS26460at 1292.294 kb on + strand, within RR42_RS26460at 1292.294 kb on + strand, within RR42_RS26460at 1292.295 kb on - strand, within RR42_RS26460at 1292.434 kb on - strand, within RR42_RS26460at 1292.678 kb on + strandat 1292.749 kb on + strandat 1292.750 kb on - strandat 1292.987 kb on + strandat 1292.988 kb on - strandat 1293.103 kb on + strandat 1293.253 kb on + strand, within RR42_RS26465

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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1,290,695 + +0.1
1,290,696 - +0.5
1,290,808 + +0.1
1,290,809 - -0.7
1,290,809 - +0.7
1,290,809 - +0.3
1,290,809 - -0.6
1,290,809 - +0.3
1,290,809 - -0.4
1,290,956 + RR42_RS26455 0.24 +0.7
1,291,664 + -0.3
1,291,721 + RR42_RS26460 0.11 +0.6
1,291,979 + RR42_RS26460 0.33 -2.7
1,291,980 - RR42_RS26460 0.33 +0.1
1,291,980 - RR42_RS26460 0.33 -0.8
1,291,980 - RR42_RS26460 0.33 -0.4
1,292,279 + RR42_RS26460 0.58 -2.8
1,292,294 + RR42_RS26460 0.59 -1.0
1,292,294 + RR42_RS26460 0.59 +0.2
1,292,295 - RR42_RS26460 0.59 -0.4
1,292,434 - RR42_RS26460 0.71 +0.7
1,292,678 + -0.6
1,292,749 + +0.1
1,292,750 - +0.7
1,292,987 + -0.3
1,292,988 - -0.3
1,293,103 + +0.3
1,293,253 + RR42_RS26465 0.15 -0.3

Or see this region's nucleotide sequence