Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23535 and RR42_RS23540 are separated by 30 nucleotides RR42_RS23540 and RR42_RS23545 are separated by 134 nucleotides
RR42_RS23535: RR42_RS23535 - hypothetical protein, at 606,107 to 607,333
_RS23535
RR42_RS23540: RR42_RS23540 - alpha-ketoglutarate-dependent dioxygenase, at 607,364 to 608,017
_RS23540
RR42_RS23545: RR42_RS23545 - hypothetical protein, at 608,152 to 609,594
_RS23545
Position (kb) 607
608
609 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.647 kb on + strand, within RR42_RS23535 at 606.648 kb on - strand, within RR42_RS23535 at 606.648 kb on - strand, within RR42_RS23535 at 606.648 kb on - strand, within RR42_RS23535 at 606.671 kb on + strand, within RR42_RS23535 at 606.671 kb on + strand, within RR42_RS23535 at 606.720 kb on + strand, within RR42_RS23535 at 606.721 kb on - strand, within RR42_RS23535 at 606.866 kb on + strand, within RR42_RS23535 at 606.867 kb on - strand, within RR42_RS23535 at 606.989 kb on + strand, within RR42_RS23535 at 606.989 kb on + strand, within RR42_RS23535 at 606.989 kb on + strand, within RR42_RS23535 at 606.989 kb on + strand, within RR42_RS23535 at 606.990 kb on - strand, within RR42_RS23535 at 606.990 kb on - strand, within RR42_RS23535 at 607.058 kb on + strand, within RR42_RS23535 at 607.058 kb on + strand, within RR42_RS23535 at 607.059 kb on - strand, within RR42_RS23535 at 607.059 kb on - strand, within RR42_RS23535 at 607.059 kb on - strand, within RR42_RS23535 at 607.059 kb on - strand, within RR42_RS23535 at 607.067 kb on + strand, within RR42_RS23535 at 607.165 kb on - strand, within RR42_RS23535 at 607.274 kb on + strand at 607.365 kb on + strand at 607.476 kb on - strand, within RR42_RS23540 at 607.900 kb on + strand, within RR42_RS23540 at 607.901 kb on - strand, within RR42_RS23540 at 607.901 kb on - strand, within RR42_RS23540 at 607.901 kb on - strand, within RR42_RS23540 at 608.081 kb on + strand at 608.081 kb on + strand at 608.082 kb on - strand at 608.082 kb on - strand at 608.082 kb on - strand at 608.106 kb on - strand at 608.819 kb on + strand, within RR42_RS23545 at 608.820 kb on - strand, within RR42_RS23545 at 608.820 kb on - strand, within RR42_RS23545 at 608.820 kb on - strand, within RR42_RS23545
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 606,647 + RR42_RS23535 0.44 +0.6 606,648 - RR42_RS23535 0.44 +0.2 606,648 - RR42_RS23535 0.44 +0.6 606,648 - RR42_RS23535 0.44 +0.8 606,671 + RR42_RS23535 0.46 -0.1 606,671 + RR42_RS23535 0.46 -0.5 606,720 + RR42_RS23535 0.50 +0.3 606,721 - RR42_RS23535 0.50 +0.7 606,866 + RR42_RS23535 0.62 -0.1 606,867 - RR42_RS23535 0.62 +2.0 606,989 + RR42_RS23535 0.72 +0.4 606,989 + RR42_RS23535 0.72 +0.1 606,989 + RR42_RS23535 0.72 -0.4 606,989 + RR42_RS23535 0.72 -0.2 606,990 - RR42_RS23535 0.72 +0.5 606,990 - RR42_RS23535 0.72 -0.1 607,058 + RR42_RS23535 0.78 +0.4 607,058 + RR42_RS23535 0.78 +0.5 607,059 - RR42_RS23535 0.78 -0.4 607,059 - RR42_RS23535 0.78 -0.3 607,059 - RR42_RS23535 0.78 +0.4 607,059 - RR42_RS23535 0.78 +0.2 607,067 + RR42_RS23535 0.78 -1.5 607,165 - RR42_RS23535 0.86 +1.0 607,274 + +0.5 607,365 + -0.8 607,476 - RR42_RS23540 0.17 +1.2 607,900 + RR42_RS23540 0.82 +0.7 607,901 - RR42_RS23540 0.82 +1.0 607,901 - RR42_RS23540 0.82 -1.0 607,901 - RR42_RS23540 0.82 +0.4 608,081 + +0.5 608,081 + +1.0 608,082 - -2.0 608,082 - +0.0 608,082 - +1.2 608,106 - -0.4 608,819 + RR42_RS23545 0.46 +0.1 608,820 - RR42_RS23545 0.46 +0.4 608,820 - RR42_RS23545 0.46 -0.3 608,820 - RR42_RS23545 0.46 +0.3
Or see this region's nucleotide sequence