Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21425 and RR42_RS21430 are separated by 12 nucleotides RR42_RS21430 and RR42_RS21435 are separated by 345 nucleotides RR42_RS21435 and RR42_RS21440 are separated by 222 nucleotides
RR42_RS21425: RR42_RS21425 - hypothetical protein, at 136,106 to 136,963
_RS21425
RR42_RS21430: RR42_RS21430 - alpha-ketoglutarate permease, at 136,976 to 138,286
_RS21430
RR42_RS21435: RR42_RS21435 - hypothetical protein, at 138,632 to 139,015
_RS21435
RR42_RS21440: RR42_RS21440 - DNA-3-methyladenine glycosylase, at 139,238 to 142,051
_RS21440
Position (kb) 136
137
138
139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 136.020 kb on + strand at 136.139 kb on + strand at 136.289 kb on + strand, within RR42_RS21425 at 136.289 kb on + strand, within RR42_RS21425 at 136.290 kb on - strand, within RR42_RS21425 at 136.404 kb on - strand, within RR42_RS21425 at 136.436 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.481 kb on + strand, within RR42_RS21425 at 136.523 kb on + strand, within RR42_RS21425 at 136.523 kb on + strand, within RR42_RS21425 at 136.589 kb on + strand, within RR42_RS21425 at 136.590 kb on - strand, within RR42_RS21425 at 136.590 kb on - strand, within RR42_RS21425 at 136.590 kb on - strand, within RR42_RS21425 at 136.730 kb on + strand, within RR42_RS21425 at 136.730 kb on + strand, within RR42_RS21425 at 136.731 kb on - strand, within RR42_RS21425 at 136.731 kb on - strand, within RR42_RS21425 at 136.732 kb on + strand, within RR42_RS21425 at 136.732 kb on + strand, within RR42_RS21425 at 136.733 kb on - strand, within RR42_RS21425 at 136.995 kb on + strand at 136.996 kb on - strand at 137.059 kb on - strand at 137.064 kb on + strand at 137.065 kb on - strand at 137.065 kb on - strand at 137.065 kb on - strand at 137.065 kb on - strand at 137.110 kb on - strand, within RR42_RS21430 at 137.148 kb on + strand, within RR42_RS21430 at 137.148 kb on + strand, within RR42_RS21430 at 137.148 kb on + strand, within RR42_RS21430 at 137.149 kb on - strand, within RR42_RS21430 at 137.223 kb on + strand, within RR42_RS21430 at 137.224 kb on - strand, within RR42_RS21430 at 137.224 kb on - strand, within RR42_RS21430 at 137.347 kb on + strand, within RR42_RS21430 at 137.347 kb on + strand, within RR42_RS21430 at 137.348 kb on - strand, within RR42_RS21430 at 137.348 kb on - strand, within RR42_RS21430 at 137.348 kb on - strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.406 kb on + strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.407 kb on - strand, within RR42_RS21430 at 137.433 kb on + strand, within RR42_RS21430 at 137.433 kb on + strand, within RR42_RS21430 at 137.433 kb on + strand, within RR42_RS21430 at 137.434 kb on - strand, within RR42_RS21430 at 137.434 kb on - strand, within RR42_RS21430 at 137.485 kb on + strand, within RR42_RS21430 at 137.485 kb on + strand, within RR42_RS21430 at 137.486 kb on - strand, within RR42_RS21430 at 137.486 kb on - strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.487 kb on + strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.488 kb on - strand, within RR42_RS21430 at 137.500 kb on + strand, within RR42_RS21430 at 137.502 kb on + strand, within RR42_RS21430 at 137.503 kb on - strand, within RR42_RS21430 at 137.503 kb on - strand, within RR42_RS21430 at 137.527 kb on + strand, within RR42_RS21430 at 137.527 kb on + strand, within RR42_RS21430 at 137.530 kb on - strand, within RR42_RS21430 at 137.557 kb on + strand, within RR42_RS21430 at 137.557 kb on + strand, within RR42_RS21430 at 137.557 kb on + strand, within RR42_RS21430 at 137.558 kb on - strand, within RR42_RS21430 at 137.558 kb on - strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.839 kb on + strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.840 kb on - strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.841 kb on + strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.842 kb on - strand, within RR42_RS21430 at 137.860 kb on - strand, within RR42_RS21430 at 137.937 kb on + strand, within RR42_RS21430 at 137.937 kb on + strand, within RR42_RS21430 at 137.938 kb on - strand, within RR42_RS21430 at 137.938 kb on - strand, within RR42_RS21430 at 138.144 kb on + strand, within RR42_RS21430 at 138.169 kb on - strand at 138.169 kb on - strand at 138.220 kb on - strand at 138.321 kb on + strand at 138.321 kb on + strand at 138.322 kb on - strand at 138.362 kb on + strand at 138.363 kb on - strand at 138.409 kb on + strand at 138.409 kb on + strand at 138.410 kb on - strand at 138.410 kb on - strand at 138.410 kb on - strand at 138.410 kb on - strand at 138.594 kb on + strand at 138.594 kb on + strand at 138.595 kb on - strand at 138.595 kb on - strand at 138.662 kb on + strand at 138.693 kb on + strand, within RR42_RS21435 at 138.771 kb on + strand, within RR42_RS21435 at 138.933 kb on + strand, within RR42_RS21435 at 138.933 kb on + strand, within RR42_RS21435 at 138.997 kb on + strand at 138.998 kb on - strand at 138.998 kb on - strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.026 kb on + strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.027 kb on - strand at 139.029 kb on - strand at 139.029 kb on - strand at 139.029 kb on - strand at 139.038 kb on + strand at 139.051 kb on + strand at 139.101 kb on + strand at 139.101 kb on + strand at 139.101 kb on + strand at 139.102 kb on - strand at 139.102 kb on - strand at 139.154 kb on + strand at 139.154 kb on + strand at 139.154 kb on + strand at 139.154 kb on + strand at 139.155 kb on - strand at 139.155 kb on - strand at 139.155 kb on - strand at 139.232 kb on + strand at 139.232 kb on + strand at 139.281 kb on + strand at 139.281 kb on + strand at 139.281 kb on + strand at 139.282 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 136,020 + +1.3 136,139 + -0.1 136,289 + RR42_RS21425 0.21 -0.2 136,289 + RR42_RS21425 0.21 +0.1 136,290 - RR42_RS21425 0.21 -1.7 136,404 - RR42_RS21425 0.35 -0.3 136,436 + RR42_RS21425 0.38 -0.6 136,481 + RR42_RS21425 0.44 +0.7 136,481 + RR42_RS21425 0.44 -1.2 136,481 + RR42_RS21425 0.44 -0.0 136,481 + RR42_RS21425 0.44 +0.9 136,523 + RR42_RS21425 0.49 +1.0 136,523 + RR42_RS21425 0.49 -0.5 136,589 + RR42_RS21425 0.56 -0.9 136,590 - RR42_RS21425 0.56 +1.2 136,590 - RR42_RS21425 0.56 -0.2 136,590 - RR42_RS21425 0.56 +0.4 136,730 + RR42_RS21425 0.73 -0.2 136,730 + RR42_RS21425 0.73 -0.2 136,731 - RR42_RS21425 0.73 +1.1 136,731 - RR42_RS21425 0.73 -0.9 136,732 + RR42_RS21425 0.73 -0.1 136,732 + RR42_RS21425 0.73 +0.8 136,733 - RR42_RS21425 0.73 -0.5 136,995 + +0.9 136,996 - -0.3 137,059 - -0.0 137,064 + -0.0 137,065 - -0.1 137,065 - -1.2 137,065 - -0.2 137,065 - -0.5 137,110 - RR42_RS21430 0.10 +0.2 137,148 + RR42_RS21430 0.13 +0.8 137,148 + RR42_RS21430 0.13 +0.5 137,148 + RR42_RS21430 0.13 +0.7 137,149 - RR42_RS21430 0.13 +0.8 137,223 + RR42_RS21430 0.19 +1.0 137,224 - RR42_RS21430 0.19 +0.3 137,224 - RR42_RS21430 0.19 +0.1 137,347 + RR42_RS21430 0.28 +0.6 137,347 + RR42_RS21430 0.28 +0.2 137,348 - RR42_RS21430 0.28 -1.2 137,348 - RR42_RS21430 0.28 +0.0 137,348 - RR42_RS21430 0.28 +1.9 137,406 + RR42_RS21430 0.33 -0.7 137,406 + RR42_RS21430 0.33 -1.5 137,406 + RR42_RS21430 0.33 -0.5 137,406 + RR42_RS21430 0.33 +0.3 137,407 - RR42_RS21430 0.33 -0.3 137,407 - RR42_RS21430 0.33 -0.5 137,407 - RR42_RS21430 0.33 +0.3 137,407 - RR42_RS21430 0.33 +0.8 137,407 - RR42_RS21430 0.33 -0.6 137,407 - RR42_RS21430 0.33 -0.0 137,407 - RR42_RS21430 0.33 +0.3 137,433 + RR42_RS21430 0.35 -0.9 137,433 + RR42_RS21430 0.35 +0.8 137,433 + RR42_RS21430 0.35 +0.1 137,434 - RR42_RS21430 0.35 -0.7 137,434 - RR42_RS21430 0.35 +0.0 137,485 + RR42_RS21430 0.39 +0.4 137,485 + RR42_RS21430 0.39 +0.2 137,486 - RR42_RS21430 0.39 +0.2 137,486 - RR42_RS21430 0.39 -0.9 137,487 + RR42_RS21430 0.39 -0.1 137,487 + RR42_RS21430 0.39 -0.3 137,487 + RR42_RS21430 0.39 +0.1 137,487 + RR42_RS21430 0.39 -0.3 137,487 + RR42_RS21430 0.39 -0.7 137,487 + RR42_RS21430 0.39 -0.3 137,487 + RR42_RS21430 0.39 +1.5 137,487 + RR42_RS21430 0.39 -1.0 137,488 - RR42_RS21430 0.39 -0.9 137,488 - RR42_RS21430 0.39 -1.2 137,488 - RR42_RS21430 0.39 -0.9 137,488 - RR42_RS21430 0.39 -0.2 137,488 - RR42_RS21430 0.39 -0.1 137,500 + RR42_RS21430 0.40 -0.2 137,502 + RR42_RS21430 0.40 +0.4 137,503 - RR42_RS21430 0.40 +0.0 137,503 - RR42_RS21430 0.40 -0.7 137,527 + RR42_RS21430 0.42 +1.0 137,527 + RR42_RS21430 0.42 +0.9 137,530 - RR42_RS21430 0.42 -0.4 137,557 + RR42_RS21430 0.44 -0.6 137,557 + RR42_RS21430 0.44 +2.1 137,557 + RR42_RS21430 0.44 -0.6 137,558 - RR42_RS21430 0.44 -0.0 137,558 - RR42_RS21430 0.44 -0.8 137,839 + RR42_RS21430 0.66 -1.0 137,839 + RR42_RS21430 0.66 +0.2 137,839 + RR42_RS21430 0.66 -1.4 137,839 + RR42_RS21430 0.66 -0.4 137,839 + RR42_RS21430 0.66 +0.6 137,839 + RR42_RS21430 0.66 -0.5 137,840 - RR42_RS21430 0.66 +0.3 137,840 - RR42_RS21430 0.66 -1.1 137,840 - RR42_RS21430 0.66 +0.0 137,840 - RR42_RS21430 0.66 +0.1 137,841 + RR42_RS21430 0.66 -0.0 137,841 + RR42_RS21430 0.66 -0.5 137,841 + RR42_RS21430 0.66 -1.6 137,841 + RR42_RS21430 0.66 -2.2 137,841 + RR42_RS21430 0.66 +0.3 137,841 + RR42_RS21430 0.66 +1.4 137,842 - RR42_RS21430 0.66 -0.5 137,842 - RR42_RS21430 0.66 -0.2 137,842 - RR42_RS21430 0.66 -0.5 137,842 - RR42_RS21430 0.66 +0.6 137,842 - RR42_RS21430 0.66 +0.9 137,860 - RR42_RS21430 0.67 -0.1 137,937 + RR42_RS21430 0.73 -0.3 137,937 + RR42_RS21430 0.73 +1.1 137,938 - RR42_RS21430 0.73 -0.3 137,938 - RR42_RS21430 0.73 -0.2 138,144 + RR42_RS21430 0.89 -0.3 138,169 - +0.2 138,169 - -0.4 138,220 - +0.1 138,321 + +1.0 138,321 + +0.2 138,322 - +2.0 138,362 + -0.5 138,363 - -0.3 138,409 + +0.1 138,409 + -0.5 138,410 - +0.4 138,410 - -0.3 138,410 - -1.5 138,410 - -1.2 138,594 + +0.4 138,594 + -1.0 138,595 - -1.5 138,595 - +0.5 138,662 + -0.4 138,693 + RR42_RS21435 0.16 +0.1 138,771 + RR42_RS21435 0.36 -1.6 138,933 + RR42_RS21435 0.78 -3.0 138,933 + RR42_RS21435 0.78 -1.6 138,997 + -1.0 138,998 - -0.8 138,998 - -0.8 139,026 + -0.5 139,026 + -3.1 139,026 + -1.3 139,026 + +0.1 139,026 + -1.5 139,027 - -0.4 139,027 - -0.8 139,027 - -0.3 139,027 - -0.1 139,027 - +0.0 139,029 - -0.4 139,029 - -1.1 139,029 - +2.5 139,038 + -1.4 139,051 + +0.1 139,101 + -0.6 139,101 + -0.2 139,101 + -0.1 139,102 - -0.1 139,102 - +0.0 139,154 + +1.4 139,154 + +0.1 139,154 + -0.8 139,154 + -0.4 139,155 - +2.2 139,155 - +0.5 139,155 - +0.3 139,232 + -1.1 139,232 + -0.0 139,281 + +0.0 139,281 + -1.8 139,281 + -1.3 139,282 - +1.2
Or see this region's nucleotide sequence