Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16510

Experiment: L-Valine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS16505 and RR42_RS16510 are separated by 242 nucleotidesRR42_RS16510 and RR42_RS16515 are separated by 403 nucleotidesRR42_RS16515 and RR42_RS16520 are separated by 206 nucleotides RR42_RS16505: RR42_RS16505 - adenylate cyclase, at 3,576,280 to 3,577,935 _RS16505 RR42_RS16510: RR42_RS16510 - hypothetical protein, at 3,578,178 to 3,578,396 _RS16510 RR42_RS16515: RR42_RS16515 - hypothetical protein, at 3,578,800 to 3,579,102 _RS16515 RR42_RS16520: RR42_RS16520 - RNA polymerase sigma factor, at 3,579,309 to 3,579,848 _RS16520 Position (kb) 3578 3579Strain fitness (log2 ratio) -1 0 1at 3577.531 kb on + strand, within RR42_RS16505at 3577.531 kb on + strand, within RR42_RS16505at 3577.635 kb on + strand, within RR42_RS16505at 3577.654 kb on + strand, within RR42_RS16505at 3577.731 kb on - strand, within RR42_RS16505at 3577.731 kb on - strand, within RR42_RS16505at 3577.775 kb on + strandat 3577.775 kb on + strandat 3577.854 kb on + strandat 3577.854 kb on + strandat 3577.854 kb on + strandat 3577.893 kb on - strandat 3577.893 kb on - strandat 3577.893 kb on - strandat 3577.893 kb on - strandat 3577.897 kb on - strandat 3577.914 kb on + strandat 3578.180 kb on - strandat 3578.297 kb on + strand, within RR42_RS16510at 3578.410 kb on + strandat 3578.415 kb on + strandat 3578.527 kb on - strandat 3578.702 kb on - strandat 3578.793 kb on + strandat 3578.794 kb on - strandat 3579.349 kb on + strandat 3579.350 kb on - strandat 3579.360 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (N)
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3,577,531 + RR42_RS16505 0.76 -0.2
3,577,531 + RR42_RS16505 0.76 -0.6
3,577,635 + RR42_RS16505 0.82 +0.1
3,577,654 + RR42_RS16505 0.83 -0.0
3,577,731 - RR42_RS16505 0.88 +0.0
3,577,731 - RR42_RS16505 0.88 +0.2
3,577,775 + -0.3
3,577,775 + +0.6
3,577,854 + +0.7
3,577,854 + -0.4
3,577,854 + +0.5
3,577,893 - +0.3
3,577,893 - +0.6
3,577,893 - -0.6
3,577,893 - -0.5
3,577,897 - -0.5
3,577,914 + +0.3
3,578,180 - -0.4
3,578,297 + RR42_RS16510 0.54 +0.5
3,578,410 + +0.0
3,578,415 + -1.4
3,578,527 - -0.3
3,578,702 - +0.4
3,578,793 + -0.1
3,578,794 - -0.5
3,579,349 + +0.4
3,579,350 - -0.1
3,579,360 - +0.0

Or see this region's nucleotide sequence