Experiment: L-Valine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01480 and RR42_RS01485 are separated by 43 nucleotides RR42_RS01485 and RR42_RS01490 are separated by 42 nucleotides
RR42_RS01480: RR42_RS01480 - hypothetical protein, at 334,403 to 335,668
_RS01480
RR42_RS01485: RR42_RS01485 - phosphonate transporter, at 335,712 to 336,077
_RS01485
RR42_RS01490: RR42_RS01490 - histidine kinase, at 336,120 to 337,553
_RS01490
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.042 kb on + strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.043 kb on - strand, within RR42_RS01480 at 335.232 kb on + strand, within RR42_RS01480 at 335.232 kb on + strand, within RR42_RS01480 at 335.233 kb on - strand, within RR42_RS01480 at 335.307 kb on - strand, within RR42_RS01480 at 335.434 kb on + strand, within RR42_RS01480 at 335.435 kb on - strand, within RR42_RS01480 at 335.435 kb on - strand, within RR42_RS01480 at 335.436 kb on + strand, within RR42_RS01480 at 335.437 kb on - strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.474 kb on + strand, within RR42_RS01480 at 335.620 kb on + strand at 335.620 kb on + strand at 335.620 kb on + strand at 335.620 kb on + strand at 335.620 kb on + strand at 335.621 kb on - strand at 335.621 kb on - strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.622 kb on + strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.623 kb on - strand at 335.731 kb on + strand at 335.732 kb on - strand at 335.806 kb on + strand, within RR42_RS01485 at 335.806 kb on + strand, within RR42_RS01485 at 335.807 kb on - strand, within RR42_RS01485 at 336.122 kb on - strand at 336.404 kb on + strand, within RR42_RS01490 at 336.405 kb on - strand, within RR42_RS01490 at 336.405 kb on - strand, within RR42_RS01490 at 336.405 kb on - strand, within RR42_RS01490 at 336.606 kb on + strand, within RR42_RS01490 at 336.606 kb on + strand, within RR42_RS01490 at 336.607 kb on - strand, within RR42_RS01490 at 336.607 kb on - strand, within RR42_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (N) remove 335,042 + RR42_RS01480 0.50 -1.5 335,042 + RR42_RS01480 0.50 -0.5 335,042 + RR42_RS01480 0.50 -0.5 335,042 + RR42_RS01480 0.50 +0.1 335,042 + RR42_RS01480 0.50 +0.4 335,042 + RR42_RS01480 0.50 +0.4 335,042 + RR42_RS01480 0.50 -1.2 335,042 + RR42_RS01480 0.50 +0.2 335,043 - RR42_RS01480 0.51 +0.9 335,043 - RR42_RS01480 0.51 +1.5 335,043 - RR42_RS01480 0.51 +0.9 335,043 - RR42_RS01480 0.51 -0.5 335,232 + RR42_RS01480 0.65 +0.6 335,232 + RR42_RS01480 0.65 +0.7 335,233 - RR42_RS01480 0.66 -0.0 335,307 - RR42_RS01480 0.71 +1.7 335,434 + RR42_RS01480 0.81 +0.4 335,435 - RR42_RS01480 0.82 +0.5 335,435 - RR42_RS01480 0.82 +0.7 335,436 + RR42_RS01480 0.82 -0.4 335,437 - RR42_RS01480 0.82 +1.1 335,474 + RR42_RS01480 0.85 -1.0 335,474 + RR42_RS01480 0.85 +0.6 335,474 + RR42_RS01480 0.85 -0.0 335,474 + RR42_RS01480 0.85 -0.8 335,620 + +0.4 335,620 + +0.1 335,620 + -0.0 335,620 + -0.0 335,620 + +0.3 335,621 - +1.4 335,621 - -0.0 335,622 + +0.4 335,622 + +0.1 335,622 + -0.1 335,622 + +0.4 335,622 + +2.1 335,622 + +3.8 335,622 + +1.1 335,623 - -0.3 335,623 - +1.0 335,623 - -0.1 335,623 - -0.3 335,623 - -0.5 335,623 - -0.1 335,623 - -0.4 335,623 - +0.5 335,731 + -2.4 335,732 - -0.3 335,806 + RR42_RS01485 0.26 +1.3 335,806 + RR42_RS01485 0.26 -0.5 335,807 - RR42_RS01485 0.26 -0.2 336,122 - +0.6 336,404 + RR42_RS01490 0.20 +0.1 336,405 - RR42_RS01490 0.20 -0.9 336,405 - RR42_RS01490 0.20 -0.9 336,405 - RR42_RS01490 0.20 -0.4 336,606 + RR42_RS01490 0.34 -1.3 336,606 + RR42_RS01490 0.34 +0.3 336,607 - RR42_RS01490 0.34 -0.9 336,607 - RR42_RS01490 0.34 -0.7
Or see this region's nucleotide sequence